Basic Information

Insect: Rhagonycha fulva
Gene Symbol: bab2
Assembly: GCA_905340355.1
Location: HG996555.1:58259359-58306772[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.3e-11 7.3e-09 36.1 0.0 1 39 376 415 376 419 0.90

2 4 1.1e-12 6.4e-10 39.4 0.1 1 39 430 468 430 472 0.95

3 4 3.5e-17 2e-14 53.8 0.0 1 45 485 530 485 530 0.97

4 4 6e-16 3.4e-13 49.9 0.0 1 39 537 576 537 581 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.3e-11	7.3e-09	36.1	0.0	1	39	376	415	376	419	0.90
2	4	1.1e-12	6.4e-10	39.4	0.1	1	39	430	468	430	472	0.95
3	4	3.5e-17	2e-14	53.8	0.0	1	45	485	530	485	530	0.97
4	4	6e-16	3.4e-13	49.9	0.0	1	39	537	576	537	581	0.92

Sequence Information

Coding Sequence: ATGGTTGGTCAGCAGTATTGCTTGAGGTGGAATAATTATCAAACAAACATGACTTCTGTTTTTCACAAATTACTACAAAATGAAGATTTTGTAGATGTGACATTAGCATGCAAGGATCTATCGCTAAAAGCTCATAAAGTGGTGTTATCTGCATGTTCTTCATATTTTCAAAAGTTGCTTTTAGAAAATCCTTGTCAACACCCCACAATAATTATGCCTCAGGACGTTTGTTATGCCGATCTGAAATTTATTATTGAATTTGTATATAAAGGAGAAATCGATGTTTCTCAAGCAGAGCTGCAGTCTTTGTTAAAAACAGCCGATCAATTAAAAATAAAAGGTTTGTGTGAATCTGAAGAAAAGGATAATTCACATTCTTCAATTTTTATACCAAGTAACAATAGTGGTTCAAAACTTAGTCAAGTATCATCACCGAAACACTACAAAAAACAAACACATAGCAATAAACGACATAAATTTAGAGAAGTAGATTTAGATGATTTGCCAGATGAAGATTGCAAAGATAACATAGTTCAAGAAGATATATCCGATGAAGATAGTGACACACCATTAATCGTTGATGAAGCACCAAAAAGAAGGAAGCTAATAGCATCAGCTCAATCTACTCCAATTAACATGAGCAGTCATGGCTTATTGGCAGGACAGGCTTTATTCTCTCAATTATGTGAAAACGATGATTTCCCACCAGAACCTCCAGCACCTTCTGCAACACCAGTTGGAGATGTGGATCTTCATGATCACTCCCCAACTCGTAATTTGTTTCAGTCATCTCACAGAACAGATTTGTCAGACGTTCACATAAAATATGAAGATATTAAAAAAGAAACTACTATTAAATTTGAAACATTACGATCCTATGATCATGATTCAATGATGGATATGGATGCTTCACATTTATCTGGACCTGATCATTCTATGGAAAGTCACGAAGATTCAAAACGATCTATGCATTCTATGATGATTACTCCAGAGTTAATAGGAATGTTACCTGGAGTATCCGGAGGAAGGCTAGAAGGTATCAAAGATGAAAATGGTCAAATGAAAAGTAATGGTCATTCAGATGCATTATTAATAAGATCTCATACTGGAGGTCCTAAAACGTGGACACAAGAAGATATGGAGTTAGCTTTAGATGCCTTAAGAAATCACAATATGAGTCTTACGAAAGCTTCTGCAACGTATGGTATTCCATCCACAACCTTATGGCAACGAGCACATAGGCTAGGAATAGATACACCAAAAAAAGAAGGTCCTACAAAGTCATGGACTGAAGAAAATTTAAATTCCGCACTGGAAGCGTTGCGAACGGGTACCATATCTGCAAATAAAGCTAGTAAAGCATATGGAATACCTAGTAGTACATTATATAAAATAGCTAGAAGAGAAGGTATTAAGCTAGCAGCGCCTTTTAATGCAGCACCAACTACATGGTCTCCAGAAGACCTAGAAAAAGCTTTAGAATCAATTAGATCAGGTCAAGCATCAGTTCAAAAGGCATCAACCGAATTTGGCATTCCCACTGGTACTTTATATGGAAGGTGTAAAAGGGAAGGTATAGAACTTTCGCGCTCAAATCCTACTCCTTGGTCAGAGGATGCAATGGGAGAGGCATTAGAAGCTGTCAGATTAGGACATATGTCGATAAATCAAGCTGCAATCCATTACAATCTTCCATATTCATCTTTGTATGGGCGATTTAAAAGAGGTGTAAAATATGACACTGAAACAATTGACTCAAATAATTCAGATAGTCAGTCTCAACCAGATTCTCAAGTTTTGGTAATGGATTATCCAAATTCACATCAACAAATTCAATATCAACATCATGGAAACAGCTGA
Protein Sequence: MVGQQYCLRWNNYQTNMTSVFHKLLQNEDFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCQHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEEKDNSHSSIFIPSNNSGSKLSQVSSPKHYKKQTHSNKRHKFREVDLDDLPDEDCKDNIVQEDISDEDSDTPLIVDEAPKRRKLIASAQSTPINMSSHGLLAGQALFSQLCENDDFPPEPPAPSATPVGDVDLHDHSPTRNLFQSSHRTDLSDVHIKYEDIKKETTIKFETLRSYDHDSMMDMDASHLSGPDHSMESHEDSKRSMHSMMITPELIGMLPGVSGGRLEGIKDENGQMKSNGHSDALLIRSHTGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYDTETIDSNNSDSQSQPDSQVLVMDYPNSHQQIQYQHHGNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00003877;
90% Identity: iTF_00270051; iTF_01293995; iTF_00268716; iTF_00269679; iTF_00272400; iTF_00268081; iTF_00270993; iTF_00927448; iTF_00271449; iTF_01293532; iTF_01291902;
80% Identity: iTF_01291902;