Rlut003851.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- bab2
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:50293609-50321247[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-11 7.7e-09 36.1 0.0 1 39 360 399 360 403 0.90 2 4 1.1e-12 6.8e-10 39.5 0.1 1 39 414 452 414 456 0.95 3 4 3.6e-17 2.1e-14 53.9 0.0 1 45 469 514 469 514 0.97 4 4 6.1e-16 3.6e-13 50.0 0.0 1 39 521 560 521 565 0.92
Sequence Information
- Coding Sequence
- ATGACTTCAGTTTTTcacaaattactacaaaatgaAGATTTTGTAGATGTGACATTAGCATGCAAGGATCTATCGCTAAAAGCTCATAAAGTGGTGTTATCTGCATGTTCttcatattttcaaaagttGCTTTTAGAAAATCCTTGCCAACACCCCACAATAATTATGCCTCAGGACGTTTGTTATGCCGATCTCAAATTCATTATTGAATTTGTATATAAAGGAGAAATCGATGTTTCTCAAGCAGAGCTGCAGTCTTTGTTAAAAACAGCcgatcaattaaaaataaaaggtttGTGTGAATCTGAAGAAAAGGATAATTCACATTCTTCAATTTTTATACCAAGTAACAATAGTGGTTCAAAACTTAGTCAAGTATCATCACCCAAACACTACAAAAAACAAACACATAGCAATAAACGACATAAATTCAGAGAAGTGGATTTAGATGATTTGCCAGATGAAGATTGCAAAGATAACATAGTTCAAGAAGATATATCCGATGAAGATAGTGACACACCATTAATCGTTGATGAAGCACCAAAAAGAAGGAAGCTAATAGCATCAGCTCAATCTACTCCAATTAACATGAGCAGTCATGGCTTATTGGCAGGACAGGCTTTATTCTCTCAATTATGTGAAAACGATGATTTCCCACCAGAACCTCCAGCGCCTTCTGCAACACCAGTTGGAGATGTGGATCTTCATGATCACTCTCCAACTCGTAATTTGTTTCAAACATCTCACAGAACAGATTTGTCAGACGTTCACATAAAATatgaagatattaaaaaagaaacTACCATTAAATTTGAAACATTACGATCCTACGATCATGATTCAATGATGGATATGGATGCTTCACATTTGTCTGGGCCTGATCATTCTATGGAAAGTCACGAAGATTCCAAACGATCTATGCATTCTATGATGATTACTCCAGAGTTAATAGGAATGTTACCTGGAGTATCTGGAGGAAGGCTAGAAGGTATCAAAGATGAAAATGGTCAAATGAAAAGTAATGGTCATTCAGATGCATTATTAATAAGATCTCATACTGGAGGTCCTAAAACGTGGACACAAGAAGATATGGAGTTAGCTTTAGATGCCTTAAGAAATCACAATATGAGTCTTACAAAAGCTTCTGCAACATATGGTATTCCATCCACAACTCTATGGCAACGAGCACATAGGCTAGGAATAGATACACCAAAAAAAGAAGGTCCTACAAAATCTTGGactgaagaaaatttaaattccgcACTGGAAGCGTTACGAACGGGTACCATATCTGCAAATAAAGCTAGTAAAGCATATGGAATACCTAGTAGTACATTATATAAAATAGCTAGAAGAGAAGGTATTAAGCTAGCAGCGCCTTTTAATGCAGCACCAACTACATGGTCTCCAGAAGACCTAGAAAAAGCTTTAGAATCAATTAGGTCGGGTCAAGCATCAGTTCAAAAGGCATCAACCGAGTTTGGCATTCCTACTGGTACTTTATATGGAAGGTGTAAAAGGGAGGGCATCGAACTTTCTCGCTCGAATCCTACTCCTTGGTCAGAGGATGCAATGGGAGAAGCATTAGAAGCTGTCAGACTAGGACATATGTCGATAAATCAAGCTGCAATCCATTACAATCTTCCATATTCGTCTTTGTATGGACGATTTAAAAGAGGTGTAAAATATGACACTGAAACAATTGATTCAAATAATTCAGATAGTCAGTCTCAACCAGATTCTCAAGTTTTGGTAATGGATTATCCAAATTCGCATCAACAAATTCAATATCAACATCATGGGAATAGCTGA
- Protein Sequence
- MTSVFHKLLQNEDFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCQHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEEKDNSHSSIFIPSNNSGSKLSQVSSPKHYKKQTHSNKRHKFREVDLDDLPDEDCKDNIVQEDISDEDSDTPLIVDEAPKRRKLIASAQSTPINMSSHGLLAGQALFSQLCENDDFPPEPPAPSATPVGDVDLHDHSPTRNLFQTSHRTDLSDVHIKYEDIKKETTIKFETLRSYDHDSMMDMDASHLSGPDHSMESHEDSKRSMHSMMITPELIGMLPGVSGGRLEGIKDENGQMKSNGHSDALLIRSHTGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYDTETIDSNNSDSQSQPDSQVLVMDYPNSHQQIQYQHHGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_01291426;
- 80% Identity
- iTF_01293995;