Lyun025674.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000074.1:1846541-1853477[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.5e-11 7.9e-09 36.3 0.0 1 39 292 331 292 335 0.90 2 4 2.2e-12 6.9e-10 39.7 0.1 1 39 346 384 346 388 0.95 3 4 7e-17 2.2e-14 54.1 0.0 1 45 401 446 401 446 0.97 4 4 1.2e-15 3.7e-13 50.2 0.0 1 39 453 492 453 497 0.92
Sequence Information
- Coding Sequence
- ATGAATTGGTGGACATTAAGCAATTCCACTCTACAAGATAGGCCGGCACTGAGTtCTTTGTTAAAAACAGCcgatcaattaaaaataaagggttTGTGTGAATCTGAAGAAAAGGATAATTCGCATTCTTCAATATTTATACCAAGCAACAGTGGGTCAAAACTTAGTCAAGTATCATCACCTAAGCActatcaaaaacaaataaataataataaacgacATAAATTTAGAGAAGTTGATTTAGATGATTTGCCAGATGAAGATTGTAAAGATAACATAGTACAAGAAGATATATCCGATGAAGATAGTGACACACCATTAATCGTTGATGAAGCACCAAAAAGAAGGAAGCTAATAGCATCGGCTCAATCTACTCCAATTAACATGAGCAGTCATGGCTTATTGGCAGGACAGGCTTTATTCTCTCAATTATGTGAAAACGATGATTTCCCACCAGAACCTCCAGCACCTTCCGCAACACCAGTTGGAGATGTTGATCTTCAAGATCACTCCCCAACTCGTAATTTGTTTCAATCATCCCATAGAACAGATTTGTCAGATGTTCACATAAAATATGaagatattaaaaaagaaactaccattaaatttgaaacattacGATCTTATGATCACGATTCAATGATGGATATGGATGCTTCACATTTATCTGGACCTGATCATTCTATGGAGAGTCATGAAGATTCAAAACGATCTATGCATTCTATGATGATTACTCCAGAGTTAATTGGAATGTTACCAGGAGTATCTGGGGGAAGGCTAGAAGGTATCAAAGATGAAAATGGTCAAATGAAAAGTAACGGTCATTCAGATTCACTGTTAATAAGATCTCACAGTGGAGGTCCTAAAACGTGGACACAAGAAGATATGGAGTTAGCTTTAGATGCCTTAAGAAATCATAATATGAGTCTTACAAAAGCTTCTGCAACGTATGGCATTCCATCCACTACTCTATGGCAACGTGCTCACAGGTTAGGAATTGATACGCCAAAGAAAGAGGGTCCCACAAAATCGTGGaccgaagaaaatttaaattctgcaCTTGAAGCCTTGAGAACGGGTACCATATCTGCAAATAAAGCTAGTAAAGCATATGGAATACCTAGTAGTACATTATATAAAATAGCAAGAAGAGAAGGTATTAAATTAGCAGCGCCTTTTAATGCAGCACCAACTACGTGGTCTCCAGAAGACTTAGAAAAAGCTTTAGAATCAATTAGATCAGGTCAAGCGTCGGTACAAAAAGCATCAACCGAATTTGGCATTCCCACTGGTACTTTATACGGAAGGTGTAAAAGGGAAGGTATAGAACTATCTCGTTCGAATCCTACTCCTTGGTCAGAGGATGCAATGGGAGAAGCATTGGAAGCTGTCAGACTGGGGCATATGTCGATAAATCAAGCAGCAATTCACTACAATCTTCCATATTCATCTTTATATGGGCGATTTAAAAGAGGTGTAAAATATGACACTGAAACAATCGATTCAAATAATTCAGATAGTCAGTCTCAACCAGATTCTCAAGTCTTGGTAATGGATTATCCAAATTCACATCAACAAATTCAATATCAACATCACGGAAATAGCTGA
- Protein Sequence
- MNWWTLSNSTLQDRPALSSLLKTADQLKIKGLCESEEKDNSHSSIFIPSNSGSKLSQVSSPKHYQKQINNNKRHKFREVDLDDLPDEDCKDNIVQEDISDEDSDTPLIVDEAPKRRKLIASAQSTPINMSSHGLLAGQALFSQLCENDDFPPEPPAPSATPVGDVDLQDHSPTRNLFQSSHRTDLSDVHIKYEDIKKETTIKFETLRSYDHDSMMDMDASHLSGPDHSMESHEDSKRSMHSMMITPELIGMLPGVSGGRLEGIKDENGQMKSNGHSDSLLIRSHSGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYDTETIDSNNSDSQSQPDSQVLVMDYPNSHQQIQYQHHGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_01291426;
- 80% Identity
- -