Cruf019871.1
Basic Information
- Insect
- Cantharis rufa
- Gene Symbol
- -
- Assembly
- GCA_947369205.1
- Location
- OX376303.1:57832197-57845017[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.1e-12 7.2e-09 36.3 0.0 1 39 299 338 299 342 0.90 2 4 8.1e-13 6.4e-10 39.7 0.1 1 39 353 391 353 395 0.95 3 4 2.5e-17 2e-14 54.1 0.0 1 45 408 453 408 453 0.97 4 4 4.3e-16 3.4e-13 50.1 0.0 1 39 460 499 460 504 0.92
Sequence Information
- Coding Sequence
- ATGAAAGTGATTACTTCCTCAAATGAATATGGACACTCTTTAACCGCTCGTGCCGCAAAAACATTCTCGGAATCTTTGTTAAAAACAGCGGATCAATTAAAAATAAAGGGCTTGTGTGAATCCGAAGAAAAGGATAATTCGCATTCTTCGATTTTTATACCAAGCAACAGTAGTGGTTCAAAACTTAGTCAAGTATCATCACCTAAGCACTATAAAAAACAAATAAATAGTAACAAACGACATAAATTTAGAGAAGTTGATTTAGATGATTTACCAGATGAAGATTGTAAAGACAACATAGTTCAAGAAGATATATCCGATGAAGATAGTGACACACCATTAATTGTTGATGAAGCACCAAAAAGAAGGAAGCTAATAGCATCAGCTCAATCTACTCCAATTAACATGAGCAGTCATGGCTTATTGGCAGGACAGGCTTTATTCTCTCAATTATGTGAAAACGATGATTTCCCACCAGAACCTCCGGCACCTTCCGCAACACCTGTTGGAGATGTCGATCTTCAAGATCACTCGCCAACCCGTAATTTATTTCAATCATCCCATAGAACAGATTTGTCAGACGTTCACATTAAATATGAGGATATAAAAAAAGAAACTAATATTAAATTTGAAACATTACGATCTTACGATCACGATTCAATGATGGATATGGATGCTTCACATTTATCTGGGCCTGATCATTCTATGGAAAGTCACGAAGATTCAAAACGATCTATGCATTCCATGATGATTACTCCAGAATTAATTGGAATGCTACCCGGAGTATCGGGGGGAAGGCTAGAAGGTATCAAAGATGAAAATGGTCAAATGAAAAGCAACGGTCATTCAGATGCATTATTAATAAGATCTCACACCGGAGGTCCTAAAACGTGGACTCAAGAAGATATGGAGTTAGCTTTAGATGCCTTAAGAAATCATAATATGAGTCTAACAAAAGCTTCTGCAACATATGGTATTCCATCCACTACTCTGTGGCAACGAGCACATAGGTTAGGAATCGATACACCAAAAAAGGAGGGTCCTACAAAATCATGGACGGAAGAAAATTTAAATTCCGCTCTCGAAGCATTACGAACGGGTACCATTTCTGCGAATAAAGCTAGTAAAGCATACGGAATACCTAGTAGTACATTATATAAAATAGCTAGAAGAGAAGGTATTAAATTAGCAGCGCCTTTTAATGCAGCACCAACGACATGGTCTCCGGAAGACTTAGAAAAAGCTTTAGAATCAATTAGATCAGGTCAGGCATCGGTTCAAAAAGCATCGACCGAATTTGGTATTCCTACTGGTACTTTATATGGAAGGTGTAAAAGGGAAGGTATTGAACTTTCTCGCTCGAATCCTACTCCTTGGTCAGAGGATGCAATGGGAGAAGCTTTGGAAGCTGTCAGACTAGGACATATGTCGATAAATCAAGCTGCAATTCATTACAATCTACCATATTCATCTTTGTATGGACGATTTAAGAGAGGTGTAAAATATGACACGGAAACCATCGATTCTAATAATTCAGATAGTCAGTCTCAACCAGATTCGCAAGTTTTGGTAATGGATTATCCAAACTCACATCAACAAATTCAATATCAACATCATGGAAATAGCTGA
- Protein Sequence
- MKVITSSNEYGHSLTARAAKTFSESLLKTADQLKIKGLCESEEKDNSHSSIFIPSNSSGSKLSQVSSPKHYKKQINSNKRHKFREVDLDDLPDEDCKDNIVQEDISDEDSDTPLIVDEAPKRRKLIASAQSTPINMSSHGLLAGQALFSQLCENDDFPPEPPAPSATPVGDVDLQDHSPTRNLFQSSHRTDLSDVHIKYEDIKKETNIKFETLRSYDHDSMMDMDASHLSGPDHSMESHEDSKRSMHSMMITPELIGMLPGVSGGRLEGIKDENGQMKSNGHSDALLIRSHTGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGVKYDTETIDSNNSDSQSQPDSQVLVMDYPNSHQQIQYQHHGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_01291426;
- 80% Identity
- -