Rmor030681.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagium mordax
Gene Symbol
BCL11A
Assembly
GCA_963680705.1
Location
OY796660.1:4859148-4870433[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 8.5 9.7e+02 2.4 0.1 2 11 25 34 24 37 0.86
2 6 1e-06 0.00012 24.2 3.0 1 23 479 501 479 501 0.96
3 6 2.2e-05 0.0025 20.0 4.4 1 23 507 529 507 529 0.99
4 6 2.8e-07 3.2e-05 25.9 2.9 2 23 719 740 718 740 0.97
5 6 2e-05 0.0023 20.1 3.3 1 23 746 768 746 768 0.99
6 6 0.00013 0.015 17.5 0.4 1 22 776 797 776 797 0.97

Sequence Information

Coding Sequence
ATGTCTTATTTCCTTTTTCTTGTTGCAGCAGATGCAGACGGAGTCGAGGGGGATTCGCACCAAGACATCCTGACCTGCGGGGTGTGCCAGAAGCCCTTCGCCCTTTCCGACATAGTGCGCTTCATCCAGCACAAGGTAACGTCCTGCAACAAAGAAAACTTCGGCCAGTGCTACACGAACAACGACAGAGACAGAGACAATGACGATGGCACGTTACCTCTATCCACGATCAACACGCGAAGGCCGAGCATATCGGCTCCTATTTCCGGTAAGAAGAATACCGGGAGCAGGGTGCATACGCCTCCGCCGGCGTCTCCTAGGCTGCCGGCTCCTGGGGATTTCTGTGTCGACGGGGCGGCCTCGTCAACGCCAAAGAGGCGAGCTTCCTCACCGCTGACGAGCTCGAGTCCTGAGGAGGATATGAAACCTATTATAAAACAAGAGAAGGTCGACACTACGATGTCCCCGGAGGGAAATAGCTGCAAGAGGTCCAGGACGGAAGTTGCTGACGCGGAATCAAACACAACGCATAGCGaACCAAGCAACTACGTGTGTTGCACCTGCAAAGCCCGACTACACTCGGCATGGAGGCTCGTCCAGCATGTCCAACATGCCCACGGAATCAAGATTTACGTAGAGAGCTCACCAACAAGTCTAAAAAGCGGCAACAGCAACAACCACAGCGCCAGCAGTTCCAGCAGCAGTTCCTCGGGTTGCTCCTCAGGCGGAGCCCCACCACCGCCGCCCAACATGAGACACCACTTACTGCCTCCACCTGACTTGCACAATCCGTTCGGAGTTGGCGGACTATTAAGGCTGCCACTTCCACCTCTGAACCACGGGCCGGTGCCGCCGGCGCCGTTATTCTCTCGTCCAGAACACCACTACAGGATCGACCAGTTGGTCAGTGAGCAGTTCCGTCATCACGGCTTGAATCTAGCTGCGGCTGCTGCGGCTGTAGCAGCAGGGGGTGTACCACCGCCGCATACGAGCTTCCCTTCACCTGCGGAGAGAGCTAGTTCGGTTAACAGCCTTCCCTCAAGGGAAAGGAGTACACCAAATCAACCTTTATCATTGGAACCACAGCTGGATTTTTACTCACAGCGGTTGAGGCAATTGGCAGGCACCACCAGCCCGGGGGCGGCGCAGGCGAGCTCGCCGTCACCCCGCAAGCACTCACCGCCTTTCGCAAGTCCTTCCCCTTCTCAGTTGCCGCCAACTTCTATCCCCAACAATATTAGCTCTAGTAGTAGTAACAGTAACCACAATAACAACAACAACCACAGTAGTAACAGTGGAAACAGCAGTAGTAGACCCCCTAGCGCTTCGCCCCCCAGCAAAGGGAACGACCAAATCATCAACACACCTAGGTCGGCATCAACTCCGCCTGGTAAACCTGGTTCGCCAAGGAATTCAAACTCCGCCGACGCAATCCACGCCTGCGACTATTGCGGCAAGAAATTCCGTTACCAAAACAACCTCGAGGTGCACCGTAGAACGCACACCGGAGAATTACCTTACAAGTGCACGGTATGTGATCACGCGTGCGCTCAAAGCTCAAAGTTAAAACGCCACATGAAGATCCATCGGACTCCGGAGGATCGCACCAGCAACGCTGGGTCCGTCGAAACCCTAGAGGGCGACGAGAGCGAAGACGAGGAAGACGTGGACGAAGAAGAGGACGAGGAGGAAGAGTTAGAAGAAGAAGAGGCTGAGGATTTGAGCGTTCCGAGTCAGATTTCAAAAAACGCAACGAATCCATCAGCTTCACTGGTAGGTGAACTGATGGATAAATTTGGACTTAGCAATATAGCGCAATACAGCGAGGCCTACAAGCAGGCTTTGCAGGAATCTAACACTGCTTTGAAGCTGCAGTTGGCCAGTAAAGACCGCGACAACAACAACACGAGTTTGTCAAGCCAGCTTAAGATTAAAAATGAATTCGGCAATGGATTGCTGCCAGTACCTCCCCCGCAACCGTTGCCGTTGTTTCCGCCCTTCAACGATTCTTATGAGGCTTCGAAAAGACTAAAGCTGGAGTTGGACCGGAACGATTGGTGGTTGCCGGGGTTGCCGCGCGAAAATAAAGGAGTGCCAGGCCCCAGCGCTCTGCTGCCCAATCCTTTGATGAAGAAGGAGTCGCGCCGAAACGATACCTGCGAATACTGTGGTAAAGTGTTCAAAAACTGTTCGAATTTGACCGTTCACAGAAGGTCGCACACAGGGGAGAAGCCATACAAATGTGAGTTATGTTCCTACGCGTGTGCTCAGAGTTCCAAGCTGACTCGGCACATGAAGACGCACGGTAGAATCGGAAAGGACGTGTACCGGTGTAGGTTTTGTGAAATGCCGTTCTCCGTACCTTCCACGTTGGAGAAGCACATGAGGAAATGCGTCGTAAACCAAGGAAAGGGGCACCTTTTGAGTACGATGCCCATGCTGTCAGGGGACGAGGATTCGTCGACGAGTATTACTTCCAAAGAGGCCGTATGA
Protein Sequence
MSYFLFLVAADADGVEGDSHQDILTCGVCQKPFALSDIVRFIQHKVTSCNKENFGQCYTNNDRDRDNDDGTLPLSTINTRRPSISAPISGKKNTGSRVHTPPPASPRLPAPGDFCVDGAASSTPKRRASSPLTSSSPEEDMKPIIKQEKVDTTMSPEGNSCKRSRTEVADAESNTTHSEPSNYVCCTCKARLHSAWRLVQHVQHAHGIKIYVESSPTSLKSGNSNNHSASSSSSSSSGCSSGGAPPPPPNMRHHLLPPPDLHNPFGVGGLLRLPLPPLNHGPVPPAPLFSRPEHHYRIDQLVSEQFRHHGLNLAAAAAAVAAGGVPPPHTSFPSPAERASSVNSLPSRERSTPNQPLSLEPQLDFYSQRLRQLAGTTSPGAAQASSPSPRKHSPPFASPSPSQLPPTSIPNNISSSSSNSNHNNNNNHSSNSGNSSSRPPSASPPSKGNDQIINTPRSASTPPGKPGSPRNSNSADAIHACDYCGKKFRYQNNLEVHRRTHTGELPYKCTVCDHACAQSSKLKRHMKIHRTPEDRTSNAGSVETLEGDESEDEEDVDEEEDEEEELEEEEAEDLSVPSQISKNATNPSASLVGELMDKFGLSNIAQYSEAYKQALQESNTALKLQLASKDRDNNNTSLSSQLKIKNEFGNGLLPVPPPQPLPLFPPFNDSYEASKRLKLELDRNDWWLPGLPRENKGVPGPSALLPNPLMKKESRRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRIGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQGKGHLLSTMPMLSGDEDSSTSITSKEAV