Pumb004115.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982917.1:13846526-13847683[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 1.8e-05 25.1 4.5 84 171 128 214 89 233 0.84
Sequence Information
- Coding Sequence
- ATGGTAGAAGATGTCAAAGCACAATTATCTGAGCGTTCTGAGTTTGAATCACTATACTACAAAGCATTATCTAGATCGCAGGAGTTGTTGTGTAAGTACAATAATGATACTGAGTCCGTGAGTGATAAATGTTGCGACCAAGCGGCTAATAACGGAAAATACGCTAAATGCATAAAATGTTTTAAGGCATATCATTTTACATGTCTTTTCTTAGCTGACGACTATAATATTCCTGCCAAGTGGCATTGTCCGGAATGCCTACACACAAGCCCCAAACTTAGCATATCCGATAAAACGTCGTTACGTAATATCTCTACTACCAGAGGTAATAAGAGGCAAGCCATTGGATCTCCACCTCAGGCGCCTGTTGAAATTACGTTATCATCCGATGATATTTGTCAACTTATTCAGGAAGCAGTTAAAAAAGAACAGGCAGTGATGCTAACTAAGTTCatagaaaatatgaaatttacCTTGAATCAACAATTGCAACCAATAAAAGATAAAATGGAAAACATGGAAAAATCTATGGCATTTATGAACCAACAGTATGAAGATCTTTTAAAAGAGTACTCAGCATCCAAGGAGAATATGAAGGAGTTGCAAAGGGAAAACTCTGAGATGAAGGCGTGTATTAACGATTTGTCTTCACGTATAAATCAGCTAGAACAGCACTCTCGTGCAAACAATGTGGAAATTCAGTGTCTGCCGGAAAAGAAGCAAGAAAATTTGATAGAGATTGTGTCGCAATTATCTAAAGTAGTGGGGAGCGGTATTCCAGAAAACGACATTAAATATTGCACAAGAGTCGCAAAGCAAAATGTCAGAAATTCCCGTCCGCGCGCCGTTGTAGTACAGCTTGCTTCCCCCCGTTATCGTGATCAATTTCTCGCAGCTaccataaaatttaataaatcgaATCCAGACAACAAACTGAATTCATCACATTTGGGATACTCTGGACCTAAATCCCCGATCTATATTACAGAACATCTGTCCACTATAAACAAGGCGCTCCATGCTGCCGCTAGAATCAGAGCCAAGGAAATCGGGTATCAGTTTGTCTGGGTACGAGGTGGTCGGATATTCATGCGGAAGTCACAGGAATCGGAACATATTTTGGTTAGGAATAAGGATACTTTGAATAAGCTGGTTTAA
- Protein Sequence
- MVEDVKAQLSERSEFESLYYKALSRSQELLCKYNNDTESVSDKCCDQAANNGKYAKCIKCFKAYHFTCLFLADDYNIPAKWHCPECLHTSPKLSISDKTSLRNISTTRGNKRQAIGSPPQAPVEITLSSDDICQLIQEAVKKEQAVMLTKFIENMKFTLNQQLQPIKDKMENMEKSMAFMNQQYEDLLKEYSASKENMKELQRENSEMKACINDLSSRINQLEQHSRANNVEIQCLPEKKQENLIEIVSQLSKVVGSGIPENDIKYCTRVAKQNVRNSRPRAVVVQLASPRYRDQFLAATIKFNKSNPDNKLNSSHLGYSGPKSPIYITEHLSTINKALHAAARIRAKEIGYQFVWVRGGRIFMRKSQESEHILVRNKDTLNKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285561; iTF_01285563; iTF_01062823; iTF_00072162; iTF_00072163; iTF_00072164; iTF_00711885; iTF_00445201; iTF_00445202; iTF_00445203; iTF_01094940; iTF_00445200;
- 90% Identity
- iTF_01285563;
- 80% Identity
- -