Pumb015697.1
Basic Information
- Insect
- Pyrrhia umbra
- Gene Symbol
- -
- Assembly
- GCA_963891755.1
- Location
- OY982929.1:5239155-5240231[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-10 6.1e-06 26.6 6.1 79 171 96 187 61 205 0.86
Sequence Information
- Coding Sequence
- ATGGATGATCCTTCTGATGGGTCGCCGAATTCCGGAATGTTATGGGGATGTTGCGACCAAGCGGCTAATAACGGAAAATACGCTAAATGCATAAAATGTTTTAAGGCATATCATTTTACATGTCTTTTCTTAGCTGACGACCATAATATTCCTGCCAAGTGGCATTGTCCGGAATGCCTACACACAAGCCCTAAACTTAGCATATCCGATAAAACGTCGTTACGTAATATCTCTACTACCAGAGGTAATAAGAGGCAAGCCATTGGATCTCCACCTCAGGCGCCTGTTGAAATTACGTTATCATCCGATGATATTCGTCAACTTATTCAGGAAGCAGTTAAAAAAGAACAGGCAGTGATGCTAACTAAGTTCatagaaaatatgaaatttacCTTGAATCAACAATTGCAACCAATAAAAGATAAAATGGAAAACATGGAAAAATCTATGGCATTTATGAACCAACAGTATGAAGATCTTTTAAAAGAGTACTCAGCATCCAAGGAGAATATGAAGGAGTTGCAAAGGGAAAACTCTGAGATGAAGGCGTGTATTAACGATTTGTCTTCACGTATAAATCAGCTAGAACAGCACTCTCGTGCAAACAATGTGGAAATTCAGTGCCTGCCGGAAAAGAAGCAAGAAAATTTGATAGAGATTGTGTCGCAATTATCTAAAGTAGTGGGGAGCGGTATTCCAGAAAACGACATTAAATATTGCACAAGAGTCGCAAAGCAAAATGCCAGAAATTCCCGTCCGCGCGCTGTTGTAGTACAACTTGCTTCCCCCCGTTATCGTGATCAATTTCTCGCAGCTaccataaaatttaataaatcgaATCCAGACAACAAACTGAATTCATCACATTTGGGATACTCTGGACCTAAATCCCCGATCTATATTACAGAACATCTGTCCACTATTAACAAGGCGCTCCATGCTGCCGCTAGAATCAGAGCCAAAGAAATCGGGTATCAGTTTGTCTGGGTACGAGGAGGTCGGATATTCATGCGGAAGTCACAGGAATCGGAACATATTTTGGTTAGGAATAAGGATACTTTGAATAAGCTGGTTTAA
- Protein Sequence
- MDDPSDGSPNSGMLWGCCDQAANNGKYAKCIKCFKAYHFTCLFLADDHNIPAKWHCPECLHTSPKLSISDKTSLRNISTTRGNKRQAIGSPPQAPVEITLSSDDIRQLIQEAVKKEQAVMLTKFIENMKFTLNQQLQPIKDKMENMEKSMAFMNQQYEDLLKEYSASKENMKELQRENSEMKACINDLSSRINQLEQHSRANNVEIQCLPEKKQENLIEIVSQLSKVVGSGIPENDIKYCTRVAKQNARNSRPRAVVVQLASPRYRDQFLAATIKFNKSNPDNKLNSSHLGYSGPKSPIYITEHLSTINKALHAAARIRAKEIGYQFVWVRGGRIFMRKSQESEHILVRNKDTLNKLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285562;
- 90% Identity
- iTF_01285563;
- 80% Identity
- -