Pdes010139.1
Basic Information
- Insect
- Pyrausta despicata
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963921415.1
- Location
- OY992850.1:15649843-15664183[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-76 4.7e-72 243.9 21.0 1 269 131 395 131 417 0.88 2 2 1 3.8e+04 -5.6 13.7 1 47 414 459 414 489 0.54
Sequence Information
- Coding Sequence
- ATGGGTAGGATAACAAAGATGACAACCCCTTCCAACAGTGATGTGGACAGTGCTGGTGACGCTTTTACAGATGGTGATTTCGACGACAGCGACGAAGAAACGGTCATAGAAAGGTGCGAGGATTCGCCCAAATCTCAAATACCTGTTAATGAGACTGTGAATGCAGATGTAAAGAATAACCTACACAACGGTTCAACGGCTATTAGTACTAGGACGATTGCTAATGGTATGGAACATCAACCGAAGGTTAACGGACTGAAAAACGGAGATAAGGAACAGTTCAGTGCTGTGGAGTGTCGCAGTAATAGTGATATGATGGAGTTTCGAAGAGATACTCATGGTGATCAGAATCCGTCTATTGTTGGAATCATTGGAGATCaacataattatGCCGAACAACGTCTTGCAGCGCGGCGGGCCGCGCGGGCGGAGGCGCGGGAGATCCGCATGCGGGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCGTACGACATGTACGCGGGCAAGCTGCCCGACACGGTGGGAAGACGGGGCGGGTCGCGGCTGGCGGCGCTCAGCCCCGCCGCGCTACACTCACCCAGGAGGAGCTCGGAAGACTCAGCAGATGACGTCTTCAACATTAAGGACCTTAGGCACGAACTCAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATACTGAACGCGCAGCTGGACAACGATAAAGCGGCGCTCGGATACCAGCTCGAACTTCTGAAGGACCGGATAGAGGAGTTACAGGAGGAATACGCGCAACTCTCGCGCGAACACAAAGAGAAGTGCTCAGCGCACGAGCGGCTAAAACGCGAGCACGCGTCCCTGGAGCGCGAGGTGACGTGCGCGCGCGACGCCGTGCGGGCGCGGGACGCCGCCGCGGCCGCCGCCGGCTTCGCCTTCGTCGAGGCGGGCGCCGACGCCGACGTGCCGGGCTTCGGCGCTGTGCCGCCGCTGGCGCTAGTGTCGCACCAGGCTGAGCAGATGCTGGGAGACGCGTCGGAAGGAACACTAGACGTCCGGTTACAGAAGCTAGTCAGCTCGAAGGCGTCCTTGGAATCCGAGGTGCGCAAGCTGAAGCTGCAGTTGAATGAAGAGCGCGCGGCGCGGCAGAACGGCGTCGCATCGCACCATGATCAAGAGTTGGAGACCGAGCTGGAGACTCTTCGACGCGGGTTAACGGAGGCAAAAGCGCGTGCAGCCCGCGCAGAGGCCGAAGCGGCGCTGCAGGCGGCGGGCTGCGCGCGGCTCGAGGCGCAGGTGGCGCGGCTGAAGGCGCGGCAGGACCACCAGGACGAGCACGAGGAGCTGCTCAAGCAGGAGAGACGCAAGCTGCAGCGCGAGGCGCGGGAGGCCCTCAACCGAGTGGAGGAACTGGAGACGGAGAACAGCCACCTCACCAAGCGCCTCGACAAACTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGRITKMTTPSNSDVDSAGDAFTDGDFDDSDEETVIERCEDSPKSQIPVNETVNADVKNNLHNGSTAISTRTIANGMEHQPKVNGLKNGDKEQFSAVECRSNSDMMEFRRDTHGDQNPSIVGIIGDQHNYAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKLPDTVGRRGGSRLAALSPAALHSPRRSSEDSADDVFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLSREHKEKCSAHERLKREHASLEREVTCARDAVRARDAAAAAAGFAFVEAGADADVPGFGAVPPLALVSHQAEQMLGDASEGTLDVRLQKLVSSKASLESEVRKLKLQLNEERAARQNGVASHHDQELETELETLRRGLTEAKARAARAEAEAALQAAGCARLEAQVARLKARQDHQDEHEELLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01281359; iTF_01282308; iTF_00074527;
- 90% Identity
- iTF_01282308; iTF_01281359;
- 80% Identity
- -