Pnig007347.1
Basic Information
- Insect
- Pyrausta nigrata
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_949316185.1
- Location
- OX438940.1:18489153-18504633[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-76 5.2e-72 243.7 17.5 1 268 131 394 131 413 0.91 2 3 1.9 3.4e+04 -5.3 15.5 1 48 414 460 414 480 0.71 3 3 0.14 2.5e+03 -1.6 2.0 212 238 467 492 455 493 0.57
Sequence Information
- Coding Sequence
- ATGGGCAGAATTACGAACATGGCAACACCTTCCAACAGTGATGTGGATAGTGCTGGTGACGCTTTTACAGATGGTGATTTCGATGACAGCGATGAAGAAACAGTTATAGAAAGGATTGATGATTCGCCCAAATCACAAATACCAGTGAATGAAACTATAAATGTAGATGTTAAAAATAATCTTCAAAACGGTTCAATAGATATAAATTCTAGGGAAAATGCTAATGGTCTGGAACATCAACCGAAGGTTAACGGACTGAAAAACTCTGATAAGGAACAGTGTAGTGTTGTGGAGTGTCGTAGTAATGGTGATATGATGGAGTTTCGAAGGGACTCTCATGGTGATCAGAATCCGTCTATTGTTGGAATCATTGGAGATCAACATAATCATGCAGAACAGCGTCTCGCGGCAAGGCGAGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGGGAGTTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCGTACGACATGTACGCGGGCAAGCTGCCCGACACGGTGGGGAGACGGGGCGGGACGCGATTGGCGGCCCTCAGCCCGGGAGGTCTGCACTCACCACGGAGGAGCTCAGAGGACTCCGCAGATGACGTTTTCAACATTAAGGACCTCAGGCACGAGCTGAAAGAAGTAGAAGAGAAGTTCCGCAAAGCGATGATACTGAACGCGCAATTGGATAACGACAAGGCGGCGCTCGGCTACCAGCTGGAACTGCTCAAAGACCGGATAGAGGAGCTGCAGGAGGAATACGCACAACTTTCCCGCGAACACAAAGAGAAGTGCTCGGCGCACGAGCGACTAAAACGCGAGCACGCGTCGCTCGAGCGCGAGGTGACGTGCGCGCGCGACGCGGTGCGGGCCCGGGACGCGGCCGCGGCGGGCGCGGGCTTCGCCTTCGCCGAGGCCGCGCCCGACGCACACGTGCCCGGCTTCGGCGCTGTGCCGCCGCTGGCGCTGGTCTCGCACCAAGCCGACCAAATGCTGGGAGACGCCTCTGAGGGGACATTAGACGTCCGGTTGCAAAAGCTTTTGAACTCGAAGCAGTCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTGAACGACGAGCGCGCCGCGCGGCACAACGGTGTCGCCAACCACCACGACCAGGAGTACGAGACTGAGCTGGAGACGCTCCGACGCTGCTTAACGGAGGCGAAGGCGCGCGCGGCTCGAGCGGAGGCGGAAGCGGCGCTGCAGGCGGCCGGCGCCGCGCGGCTCGAGGCGCAGGTGGCCCGTCTGCGCGCGCGCCAGGACCACCAGGACGAACACGAGGAACTGCTCAAGCAGGAGCGGCGCAAGCTGCAGCGAGAGGCGCGGGAAGCCCTCAACCGAGTGGAGGAGCTTGAGACGGAGAACAGCCACCTCAGCAAGCGGCTGGACAAGCTCAAGAACGCCAAGTCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MGRITNMATPSNSDVDSAGDAFTDGDFDDSDEETVIERIDDSPKSQIPVNETINVDVKNNLQNGSIDINSRENANGLEHQPKVNGLKNSDKEQCSVVECRSNGDMMEFRRDSHGDQNPSIVGIIGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKLPDTVGRRGGTRLAALSPGGLHSPRRSSEDSADDVFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLSREHKEKCSAHERLKREHASLEREVTCARDAVRARDAAAAGAGFAFAEAAPDAHVPGFGAVPPLALVSHQADQMLGDASEGTLDVRLQKLLNSKQSLESEVRKLKLQLNDERAARHNGVANHHDQEYETELETLRRCLTEAKARAARAEAEAALQAAGAARLEAQVARLRARQDHQDEHEELLKQERRKLQREAREALNRVEELETENSHLSKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01280310;
- 90% Identity
- iTF_01280310;
- 80% Identity
- -