Pnig041630.1
Basic Information
- Insect
- Pterostichus niger
- Gene Symbol
- bab1
- Assembly
- GCA_947425015.1
- Location
- OX380342.1:34150646-34159387[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-17 3.1e-14 53.9 0.0 1 43 28 71 28 73 0.95 2 2 3.1 3.9e+03 -0.8 0.8 6 15 154 163 152 169 0.87
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAACACAAACCAATCCCTCGTCCACAACCTGAGGTTTCGAGAGCGGGGCCCCCTTAAGTCCTGGCGGCCCGAGACCATGGCCGAAGCCATCTTCTCGGTGCTCAAGGAGGGCCTGTCTCTGAGCCAGGCAGCGCGCAAGTACGACATCCCGTACCCCACCTTTGTGTTGTACGCGAACCGAGTGCACAACATGTTGGGCCCCAGTGCGGACGGCGGGGCGGATTTGAGGCCCAAGGGCAGAGGACGTCCGCAGAGGATCTTGTTGGGGGTCTGGCCCGATGAGCATATAAGGGGGGTGATTCGCGCGGTCGTGTTCAGAGATACGCATCATATTAAGGAGGAACCGCAGCATATGGGATATCCGCGGATGCATGAAGGTTACGTGAGCACGACGCCCGGCAGCAACGGCCCCGAGCCCACAGTTTCCCCAGGCGCCGCCGCCGCAGCCGCCGTCGCCGCAGTGGCCCAAGGCCTCCGGCAACAAATGTGCAGCATGGTAGCAGCAGCCCAACACCAGTCCAGCTCGCACGACACCAACCCAGTGGCATCGCTAGTGAACTCTCTCGCGTTCGGCGGCCACATGGCTCCAAGTAACGGAGCTCTCCTCCGTGGCTTAGCATCCAGTCCTGCCGAGGACCTGCGTATGACAAGCCCTGCCGGCTCCGCGCTGGACAGTCCCCTGGCATCACCACTAGGTCTGTTAGACCGCAGTGTCGATCACTCCGTCGCAAGCGCGGCACTCAACCTGGGCCTGCCACCAAGTGTGGAGGTTGGCATCGGCATGGCGTACAAGCCAGCGCGAGCTTACAGTTCGCCGCGGCCAGAAAACCTGTTCCAGGAGGATATAGATGAGATTGTGAAGCCTATGCAGTTGACGGCTACGGCGCTGAAGGAACCTAAGGATGCGCCTCATCCCCACCAGCATGTGCTGCCGCTGCCGCCCATCAAGGTGGAACCCCTCACCACGGAGTGCAGGGGAGATTAA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHIKEEPQHMGYPRMHEGYVSTTPGSNGPEPTVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSSHDTNPVASLVNSLAFGGHMAPSNGALLRGLASSPAEDLRMTSPAGSALDSPLASPLGLLDRSVDHSVASAALNLGLPPSVEVGIGMAYKPARAYSSPRPENLFQEDIDEIVKPMQLTATALKEPKDAPHPHQHVLPLPPIKVEPLTTECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00766316; iTF_01225581; iTF_01104177; iTF_00768027; iTF_01039144; iTF_01040037; iTF_01040780; iTF_00469547; iTF_00028629; iTF_00902944;
- 90% Identity
- iTF_01225581;
- 80% Identity
- -