Nsal008741.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- bab1
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000062.1:476157-482158[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 2.5e-14 53.6 0.0 1 43 85 128 85 130 0.95 2 2 2.3 4.3e+03 -1.6 1.3 6 15 213 222 211 226 0.87
Sequence Information
- Coding Sequence
- ATGGTTATACTAGTAGtgctaaataaatcaaaacttCAAAGATACACACAAACTAACGCTTGGTTTTTTCTCTTTTTGTTACAGGCCAAGTTATTAGAGTCTTCTCATGCTTGGCTCGGCGCCTCTACGTCTTCGATAGCCGCAGACAGCTACCAGTACCAGTTGCAGTCCATGTGGCAGAAGTGCTGGAACACGAACCAGAGTCTCGTGCATAATCTGAGGTTTCGAGAACGGGGCCCCCTTAAATCCTGGCGGCCTGAGACCATGGCCGAAGCCATCTTCTCAGTGCTCAAGGAGGGTCTCTCACTAAGCCAGGCAGCCCGCAAATACGACATCCCTTATCCTACCTTCGTCCTCTACGCGAACAGAGTGCATAACATGCTCGGTCCCAGCGCTGATGGCGGTGCGGATCTAAGACCCAAAGGTAGAGGTCGTCCCCAGAGAATTTTATTAGGAGTTTGGCCTGATGAACATATACGAGGGGTTATACGGGCCGTGGTGTTTAGAGATACTCATCATATTAAAGaagaacaacaacaacaacatatgGCATATCCGCGAATGCATGAGGGTTACGTTAGTACAACACCAGGCAGTAACGGTCCCGAACCCACGGTATCGCCTGGAGCAGCGGCTGCAGCTGCGGTCGCTGCAGTCGCCCAAGGTCTCCGTCAACAAATGTGTAGTATGGTTGCAGCAGCACACCACCAATCTTCGTCACATGACACCAATCCTGTAGCTTCGCTTGTGAATTCCCTATCATTCGCCAGTCATATGCCATCAAGCAACGGCGCAATGGTACATGGACTACGGGGTATGATTCCAAGTCCTGCTGAAGATCTACGAATGACAAGTCCTGTGGGTTCTGGACTCGACAGTCCACTTTCCTCTCCCTTAGGACTGACAATGTCTAGTGGGCTTGATCAAGGTCTTAATTTAGGAATGCATCCCAACGTCGAAGTTGGGATTGGCGTATCTGGGATGACGTATAAACCTGCGCGAAGCTATAGTAGTCCCAGACCCGAGAATTTATTTCAAGAAGATATTGATGAGATTGTCAAACCAATGCAGTTGACTTTACCGAGTAGAATGAGTCTCAAGGACCCGTCTAAGGATTCAGGCATGCCTATTAAATTAGAGCCTATGGCGGAATGTAGGGGGGACTAG
- Protein Sequence
- MVILVVLNKSKLQRYTQTNAWFFLFLLQAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHIKEEQQQQHMAYPRMHEGYVSTTPGSNGPEPTVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHHQSSSHDTNPVASLVNSLSFASHMPSSNGAMVHGLRGMIPSPAEDLRMTSPVGSGLDSPLSSPLGLTMSSGLDQGLNLGMHPNVEVGIGVSGMTYKPARSYSSPRPENLFQEDIDEIVKPMQLTLPSRMSLKDPSKDSGMPIKLEPMAECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01275169;
- 90% Identity
- iTF_01039144;
- 80% Identity
- -