Nbre012154.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- bab1_1
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000217.1:465930-475557[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 2.6e-14 53.5 0.0 1 43 97 140 97 142 0.95 2 2 2.3 4.6e+03 -1.7 1.3 6 15 227 236 225 240 0.87
Sequence Information
- Coding Sequence
- ATGGTACGCGATGTCGCACATATATCATGCGATGCCGCTGCTACCCAGGTCAAATCTATGAAATTGTGTTCGACTCTAATCCAGGGTTATGTGTTAAGAAACGGGGACGTTTTGATAATGGCCAAGTTATTAGAGTCTTCTCATGCTTGGCTCGGCGCCTCTACGTCTTCGATAGCCGCAGACAGCTACCAGTACCAGTTGCAGTCCATGTGGCAGAAGTGCTGGAACACGAACCAGAGTCTCGTGCATAATCTGAGGTTTCGAGAACGGGGCCCCCTTAAATCCTGGCGGCCTGAGACCATGGCCGAAGCCATCTTCTCAGTGCTCAAGGAGGGTCTCTCACTAAGCCAGGCAGCCCGCAAATACGACATCCCTTATCCCACCTTCGTCCTCTACGCGAACAGAGTGCATAACATGCTCGGTCCCAGCGCGGATGGCGGTGCGGATCTAAGACCCAAAGGTAGAGGTCGTCCCCAGAGAATTTTATTAGGTGTTTGGCCTGATGAACATATACGAGGGGTTATACGGGCCGTGGTGTTTAGAGATACTCATCATATTAAagaagaacaacaacaacaacaacaacatatgGCATATCCGCGAATGCATGAGGGTTACGTTAGTACAACACCAGGCAGTAACGGTCCCGAACCCACGGTATCGCCTGGGGCAGCTGCTGCAGCTGCAGTCGCTGCAGTCGCCCAAGGTCTCCGTCAACAAATGTGTAGTATGGTTGCAGCAGCACACCACCAATCGTCGTCACATGACACCAATCCTGTCGCTTCGCTTGTGAATTCCCTATCATTCGCCAGTCATATGCCATCAAGCAACGGCGCAATGGTACACGGACTACGGGGTATGATTCCAAGTCCTGCTGAAGATCTACGAATGACAAGTCCTGTGGGTTCTGGACTCGACAGTCCACTTTCCTCACCCTTAGGACTGACAATGTCTAGTGGGCTTGATCAAGGTCTCAATTTAGGCATGCATCCCAACGTGGAAGTTGGGATTGGCGTATCTGGGATGACGTATAAACCTGCGCGAAGCTATAGTAGTCCCAGACCGGAGAATTTATTTCAAGAAGATATTGATGAGATTGTCAAACCAATGCAGTTGACTTTACCGAGTAGAATGAGTCTCAAGGACCCGTCTAAGGATTCAGGCATGCCTATTAAATTAGAGCCTATGGCGGAATGTAGGGGGGACTAG
- Protein Sequence
- MVRDVAHISCDAAATQVKSMKLCSTLIQGYVLRNGDVLIMAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHIKEEQQQQQQHMAYPRMHEGYVSTTPGSNGPEPTVSPGAAAAAAVAAVAQGLRQQMCSMVAAAHHQSSSHDTNPVASLVNSLSFASHMPSSNGAMVHGLRGMIPSPAEDLRMTSPVGSGLDSPLSSPLGLTMSSGLDQGLNLGMHPNVEVGIGVSGMTYKPARSYSSPRPENLFQEDIDEIVKPMQLTLPSRMSLKDPSKDSGMPIKLEPMAECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01275169;
- 90% Identity
- iTF_01040037; iTF_01040780;
- 80% Identity
- -