Ning005660.1
Basic Information
- Insect
- Nebria ingens
- Gene Symbol
- bab1
- Assembly
- GCA_018344505.1
- Location
- JADQWA010000182.1:290347-300153[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8e-18 1.2e-14 53.7 0.0 1 43 63 106 63 108 0.95 2 2 0.97 1.4e+03 -1.0 0.8 6 15 189 198 187 204 0.87
Sequence Information
- Coding Sequence
- ATGCGACGCGACGCGACGGCCAAGTTATTAGAGTCTTCTCATGCTTGGCTCGGCGCCTCAACGTCTTCGATAGCCGCAGACAGCTACCAGTATCAGTTGCAGTCCATGTGGCAGAAGTGCTGGAACACGAACCAGAGTCTGGTGCATAACCTGAGGTTTCGAGAACGGGGCCCCCTTAAATCCTGGCGGCCTGAGACCATGGCCGAAGCCATCTTCTCAGTGCTCAAGGAGGGTCTCTCATTAAGCCAGGCAGCCCGTAAATACGACATCCCTTATCCTACCTTCGTCCTCTACGCAAACAGAGTACATAACATGCTCGGTCCAAGCGCTGATGGCGGAGCGGATCTAAGACCCAAAGGTAGAGGTCGTCCCCAGAGAATTTTATTGGGAGTTTGGCCTGATGAACATATTCGTGGGGTCATACGGGCCGTAGTATTTAGAGATACTCATCATATTAAAGAAGAACAACAACATATAGCATATCCGCGAATGCATGAGGGTTACGTTAGTACAACGCCGGGCAGTAACGGTCCGGAACCCACAGTATCGCCTGGAGCAGCGGCTGCAGCCGCAGTCGCTGCTGTCGCTCAAGGTCTTCGTCAACAAATGTGTAGTATGGTCGCAGCAGCGCAACACCAATCTTCTTCACATGACACCAATCCTGTAGCTTCGCTAGTAAACTCGCTATCATTCGCCAGTCATATGCCCTCGAGCAATGGCGCGATGGTACACGGACTACGAGGCATGATTCCAAGTCCTGCTGAAGATCTTCGAATGACAAGTCCCGGGGGCTCCGGACTAGACAGTCCACTCTCCTCCCCTTTAGGGCTGGCAATGTCTAGTGGACTTGATCAAGCTCTTAATTTAGGACTCCATCCCAACGTTGAAGTTGGGATTGGAGTATCTGGGATGACGTATAAACCTGCGCGAAGCTATAGTAGTCCCAGGCCCGAGAATTTATTTCAAGAAGATATCGATGAGATTGTCAAACCAATGCAGTTGATCTCACCGAGTAGGATGGGTCTGAAGGACCCGACTAAGGATTCTGGCATGTCTATTAAATTAGAGCCAATGGCGGAATGTAGGGGGGACTAG
- Protein Sequence
- MRRDATAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHHIKEEQQHIAYPRMHEGYVSTTPGSNGPEPTVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHQSSSHDTNPVASLVNSLSFASHMPSSNGAMVHGLRGMIPSPAEDLRMTSPGGSGLDSPLSSPLGLAMSSGLDQALNLGLHPNVEVGIGVSGMTYKPARSYSSPRPENLFQEDIDEIVKPMQLISPSRMGLKDPTKDSGMSIKLEPMAECRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01275169;
- 90% Identity
- iTF_01039144;
- 80% Identity
- -