Basic Information

Insect: Pseudomyrmex pallidus
Gene Symbol: -
Assembly: GCA_014825455.1
Location: QVNV01006835.1:23183-28130[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.8e-05 0.0027 18.3 1.8 1 23 644 666 644 666 0.97

2 17 0.18 17 6.4 2.2 1 14 672 685 672 690 0.90

3 17 0.16 16 6.5 0.4 2 23 699 720 698 720 0.95

4 17 0.0008 0.078 13.8 2.1 3 23 729 750 728 750 0.98

5 17 0.0018 0.18 12.6 1.5 2 23 758 780 757 780 0.96

6 17 8.3e-05 0.0081 16.8 0.7 1 23 786 809 786 809 0.94

7 17 0.2 20 6.2 0.6 2 23 817 837 817 837 0.96

8 17 5.6e-07 5.4e-05 23.7 2.3 2 23 843 864 842 864 0.97

9 17 4.5e-06 0.00043 20.8 0.3 1 23 870 892 870 892 0.99

10 17 0.00028 0.027 15.2 2.4 2 23 904 926 903 926 0.95

11 17 0.0036 0.35 11.7 3.3 1 23 932 955 932 956 0.95

12 17 0.01 1 10.3 1.4 2 23 971 993 970 993 0.94

13 17 3.6e-05 0.0035 18.0 0.4 2 23 1000 1022 999 1022 0.97

14 17 0.00013 0.012 16.3 1.7 3 23 1031 1051 1030 1051 0.98

15 17 0.0011 0.1 13.4 2.3 1 23 1057 1080 1057 1080 0.96

16 17 1.2 1.1e+02 3.8 4.1 2 23 1087 1108 1086 1108 0.96

17 17 0.0084 0.81 10.5 2.6 1 23 1114 1136 1114 1136 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.8e-05	0.0027	18.3	1.8	1	23	644	666	644	666	0.97
2	17	0.18	17	6.4	2.2	1	14	672	685	672	690	0.90
3	17	0.16	16	6.5	0.4	2	23	699	720	698	720	0.95
4	17	0.0008	0.078	13.8	2.1	3	23	729	750	728	750	0.98
5	17	0.0018	0.18	12.6	1.5	2	23	758	780	757	780	0.96
6	17	8.3e-05	0.0081	16.8	0.7	1	23	786	809	786	809	0.94
7	17	0.2	20	6.2	0.6	2	23	817	837	817	837	0.96
8	17	5.6e-07	5.4e-05	23.7	2.3	2	23	843	864	842	864	0.97
9	17	4.5e-06	0.00043	20.8	0.3	1	23	870	892	870	892	0.99
10	17	0.00028	0.027	15.2	2.4	2	23	904	926	903	926	0.95
11	17	0.0036	0.35	11.7	3.3	1	23	932	955	932	956	0.95
12	17	0.01	1	10.3	1.4	2	23	971	993	970	993	0.94
13	17	3.6e-05	0.0035	18.0	0.4	2	23	1000	1022	999	1022	0.97
14	17	0.00013	0.012	16.3	1.7	3	23	1031	1051	1030	1051	0.98
15	17	0.0011	0.1	13.4	2.3	1	23	1057	1080	1057	1080	0.96
16	17	1.2	1.1e+02	3.8	4.1	2	23	1087	1108	1086	1108	0.96
17	17	0.0084	0.81	10.5	2.6	1	23	1114	1136	1114	1136	0.98

Sequence Information

Coding Sequence: ATGTTTTCTTCTACAAGCAGTAGATGTGATCACAATTACAGCGGGGTGGAGCCTTCTCTACTTGCAAGCAACAGCGATGATGCTTCTAAGACAAGTACAGAATCCCAGAAATCATCAATCTCAATTATAAGGAATGACAATGACACTTGCCAACAAAAAATGTTGCCTATTTCAGAAAAGACACGTCAAGCACTAACAAAATATTGCCGTACCTGTGCTAGTATAAAAATGCCCTTGATTGATATTTTTAGCAAAAAAGGTATGGAAATGCGACTAAGTCACCAAATTAAACATCTATATCAGATCAATCGTAATAGTCTTACCACACAAATGTGTATAGACTGCATTTACGATCTTAAAATGAGCTACAAATTTTTCACACAAATAAAAAAAGCTGAAAGAAAACTTGCATTTATCTTTAATAATTTAAGCAAGGAATTGTTAGACAAGGAATCTTCTCCAAAACAACAGGAAAAACAATCATGTTATATAGAAAAAGAAGTACCACCTTCTAAATGTCAGAAAGATTCTTTCGTCCCGGAAACACAGAGTCGACAATCATTTACAACACAACAAAACTCCCAAAACTCCCAAAACTCTCAAAACTCTCAAAACTCAACAATTTCTAAAAATGAAGAAGAAAGCGACTCTGTTTCCACAACTATCGTTAAGATAGTTCCACTGCAAAATGAGCCGGAAAACGATTCTAGAGCGAAAGAAGACAAACAGGTGGATAAGAATATTATCGAAGTAACTAGGGAGGATGATGAGGATTCTATCGTGGAATTTGACCCCGAAGATCAATCTACACAGGAAAATGAAGAAGTACAAGTATCTTCAAATTCCGCTGTCACAATTTACACATACGATACAGCAGCTGAGTCCTATGTGATGGTGGAAAATGATAAGGCGAAAACTTCTGTAACACCCGAGGTCTCTCAGATCTTAACAAATGAGGAAGAAAAGCAAAAAGAGGAAACAAGGCAGCCGAATATTCTGAAAAGAAGGTTACTAATGCCATCCTCGAAAAAAGACGAGGCGGAAGATGCAGCACAAAATGGAGTAGAGGATTCTTCACAGGATGCTCCAAAGGACTCTAAAATACAAAAGGTGGATGTAAATAATCCGTTGAATGTAAATGTTCTGAATGAGGACGGGATTATGTACATGACTATGAAAGGATCAGCAAACAGCACTCTATTGATGAAGGTTAAAAAAGTGGATAAACCTGTGGAACCAAAACGTTTTCTTGTACGCTATAATCAAGCAGGAACATCTCAACGTACTGATTCTCGCGAACAAATAATTGAGGAACAAATTGAAGAGTATAAAAAAAAACGAGAAAAAGTTCTCGGTAATCAGTCACCAGCCACTTTAATAGCGAATGCAAAAGAAGTTCAACCACAAAAAGAAGTGACGACGCCAAAAGAAGTTCCAACGCAAAAAGAAATCCCAACGCAAAAAGAAGTTCCAATGCAAAAAAAAGTTCCAACGCAAGAAGAAGTTCCTGTACAGATTGAAAGCATAGAAATATCGGATGACGATAAAACAGAAGAGACTGAGAAAACGGACGAAGATCAGGAGAAAGTAGATACCAATACAAACGAATATGCTTCGAGATTATCAAAATTGAAACAGAAGTGGGAAGAGACGAGACGAAAAAAAATAAGCTTGCAGAAGAAAGACTTGAATGAGTCATATAACGAAGAAAATTTAGAGAGATTGGCCAAAGTTTTAGGAAATGACAATACAAACTTGAAGGAGTTTCTGGATTATCTAAAGCAACGAAAGATTGTGCTTACACGTCTCAAAGATGAAGATATAATTTCTCTCTACGAAGATCGTTTTTCTATAAAATCAATTGTTAAACCTCTTCCGGATCTTATTGATACTCAGCCACCGAGTGATGCTCTTCCGGAAGAAAATTATTTTGACTGCGATTATTGTCCGAAAATCTTTTCTACCTGTGAGAAACTTGAGGAACATCTTAAATCACACGATTATCACATCCTTCACTATTGTGAAGACTGCGGGGAAGAGTTTTCGACACAGAAAGCAAAGAGATGTCATAGTGTCATATGTGTGAAAAAGTTGATTTGCCAATATTGCGACATTATTTTTGAAGGCAAGGGGAAAAAGCGTCAACATGAGCAAAAACATATAGATGATCTTTACGGTCAGCTTTGCGAGTTTTGTGGAGAGAAATTCAAACATCAGGGCACATTAGATCAGCACGTTAAAACTCGTCATACGATCTTAGAGAAAACCATACAATGTCCGAAATGTCCGAAAAAATTTACGATGAAGCAAAAGTTGAGTTTTCACATGAAGTCTGTCCACACGACCTCGAGAGCGTATCTTTGTGAAGACTGTGGAGCAGATTTTAAGAATCCCGCGAGTTTGAGACATCATAGAATCAGGAAACATCAATTGGTTGGAAACAAGAGAGAATGTCCGGTTTGCAGAAAAGTAGTGCCTTTTTATGGTTTATCTAAACACATGCATACACACAAGGCTTACAGTATTCAATGTCCGCACTGCGACAAGATGTTCAAAAACACATCGACTTTGAAGCAACACGTGAGGATTCACGAAGATCAAAGGCAGTATCGTTGCGATACCTGCGGAGTTGGTTTTAATCGAAGAGACGGTTTAAGACTGCACATGAAGGTGCACGAAAAATCAGGCAGCAGAGGTTTGAAAGAGTGTTCTTGCCAAATTTGTGGAGAGAAGTTCCCAAATCACTCGACTTTGGTAATTCACAGAAACCGAGTACACAAGGATGGGAGACAGTATACCTGCCACATTTGCAACAGATCAATGATCTCGTCGAGATCGCTTGAATGGCACATGGCACATATCCATCATCAGTCAATGCCAGGCTCCACTAACGAATCCGAACAACGGGTTTCTTGCTATCAATGCAATAAAACATTCAAAACGGAAATGATCTTACGAACGCACATCAAGAACACACACATAATCAAAGATCCGGTAAAATGTCCCGATTGCGATCTCATGTTCAAATCTGAAGTGCGTTTACGCCATCACATGATGGTCGCGCACAACCGTTTGGAAGGCACTTTACTATGTCCGCATTGTCCGAAACGTTTCGTCAATCAATTGAGGCTTAAAACTCATATGATTTCTCATTCTGAGGAAAGACCGTACACTTGCGAGATTTGTGGTTTTAATTTAAAGACGAAGATTCAACTGATCAAACATCATCAGAACCGACACAGTGATGAGAGACCTCTGCAGTGCAGATACTGTTCTTGGCGATGCAAGCAAGTGAGTGCTCTCGTCTGTCACGAGCGTACGCATACCAATGAGCGTCCATACTCGTGTAGCGTGTGTCGGCAGCGCTTTAAATATCTAGGTGACAAAAACAAACATGAGCGACGTCATGAAAGTCTTGGTGGTTCAGGATTCAAACGTATTGTGCCAGTGAGAACTGTTAAAGTGAAAGAACAACGTACTGACGATTCTTCCGTATCTGAGCAAGACCAAGGTTCTCAGGACTCTATAGTTACCCAAGATACTCCAAAATTATATGAAGGGCAACAGACAAAGGAATTTAACAGAGAACAGGTCGAATTGAAGCATGAAATTGATATCGAGACTGCTGAAGGTTACGAACAGAAATACGAGGAAAGTTCGAGAGAAACATCGGAAGCTACAGAATTAATAATGAACATGGAAGATTCCAATGTATATACAGAGGAAGTAACAGCTGATAGTATAGAGTCCAATGTGGAGATTATAACGGACGAGATAATGACAAATGACATTTTGCAATCGGGAACTACAGCTGTGGTACATCTGCAGGAAGACGATACAGGGAAGATTCAAGTGATACCTGTGATGCTTGATCTGTCTGATGCAAACACTGAGGTCGCTCTTCCAACCGCGTCTATTATGTATAATAATTAA
Protein Sequence: MFSSTSSRCDHNYSGVEPSLLASNSDDASKTSTESQKSSISIIRNDNDTCQQKMLPISEKTRQALTKYCRTCASIKMPLIDIFSKKGMEMRLSHQIKHLYQINRNSLTTQMCIDCIYDLKMSYKFFTQIKKAERKLAFIFNNLSKELLDKESSPKQQEKQSCYIEKEVPPSKCQKDSFVPETQSRQSFTTQQNSQNSQNSQNSQNSTISKNEEESDSVSTTIVKIVPLQNEPENDSRAKEDKQVDKNIIEVTREDDEDSIVEFDPEDQSTQENEEVQVSSNSAVTIYTYDTAAESYVMVENDKAKTSVTPEVSQILTNEEEKQKEETRQPNILKRRLLMPSSKKDEAEDAAQNGVEDSSQDAPKDSKIQKVDVNNPLNVNVLNEDGIMYMTMKGSANSTLLMKVKKVDKPVEPKRFLVRYNQAGTSQRTDSREQIIEEQIEEYKKKREKVLGNQSPATLIANAKEVQPQKEVTTPKEVPTQKEIPTQKEVPMQKKVPTQEEVPVQIESIEISDDDKTEETEKTDEDQEKVDTNTNEYASRLSKLKQKWEETRRKKISLQKKDLNESYNEENLERLAKVLGNDNTNLKEFLDYLKQRKIVLTRLKDEDIISLYEDRFSIKSIVKPLPDLIDTQPPSDALPEENYFDCDYCPKIFSTCEKLEEHLKSHDYHILHYCEDCGEEFSTQKAKRCHSVICVKKLICQYCDIIFEGKGKKRQHEQKHIDDLYGQLCEFCGEKFKHQGTLDQHVKTRHTILEKTIQCPKCPKKFTMKQKLSFHMKSVHTTSRAYLCEDCGADFKNPASLRHHRIRKHQLVGNKRECPVCRKVVPFYGLSKHMHTHKAYSIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKSGSRGLKECSCQICGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISSRSLEWHMAHIHHQSMPGSTNESEQRVSCYQCNKTFKTEMILRTHIKNTHIIKDPVKCPDCDLMFKSEVRLRHHMMVAHNRLEGTLLCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCSWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPVRTVKVKEQRTDDSSVSEQDQGSQDSIVTQDTPKLYEGQQTKEFNREQVELKHEIDIETAEGYEQKYEESSRETSEATELIMNMEDSNVYTEEVTADSIESNVEIITDEIMTNDILQSGTTAVVHLQEDDTGKIQVIPVMLDLSDANTEVALPTASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267026;
90% Identity: iTF_01268453; iTF_01269232; iTF_01267745; iTF_01270686; iTF_01267026; iTF_01269975;
80% Identity: -