Basic Information

Insect: Pseudomyrmex flavicornis
Gene Symbol: -
Assembly: GCA_014825475.1
Location: QVNW01000377.1:21242-26157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.8e-05 0.0029 18.3 1.8 1 23 637 659 637 659 0.97

2 17 0.18 19 6.4 2.2 1 14 665 678 665 683 0.90

3 17 0.16 17 6.5 0.4 2 23 692 713 691 713 0.95

4 17 0.00078 0.083 13.8 2.1 3 23 722 743 721 743 0.98

5 17 0.0018 0.19 12.6 1.5 2 23 751 773 750 773 0.96

6 17 8.1e-05 0.0087 16.9 0.7 1 23 779 802 779 802 0.94

7 17 0.2 21 6.2 0.6 2 23 810 830 810 830 0.96

8 17 5.4e-07 5.8e-05 23.7 2.3 2 23 836 857 835 857 0.97

9 17 4.4e-06 0.00046 20.9 0.3 1 23 863 885 863 885 0.99

10 17 0.00027 0.029 15.2 2.4 2 23 897 919 896 919 0.95

11 17 0.0035 0.37 11.7 3.3 1 23 925 948 925 949 0.95

12 17 0.01 1.1 10.3 1.4 2 23 964 986 963 986 0.94

13 17 3.6e-05 0.0038 18.0 0.4 2 23 993 1015 992 1015 0.97

14 17 0.00013 0.013 16.3 1.7 3 23 1024 1044 1023 1044 0.98

15 17 0.001 0.11 13.4 2.3 1 23 1050 1073 1050 1073 0.96

16 17 1.1 1.2e+02 3.8 4.1 2 23 1080 1101 1079 1101 0.96

17 17 0.0082 0.87 10.5 2.6 1 23 1107 1129 1107 1129 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.8e-05	0.0029	18.3	1.8	1	23	637	659	637	659	0.97
2	17	0.18	19	6.4	2.2	1	14	665	678	665	683	0.90
3	17	0.16	17	6.5	0.4	2	23	692	713	691	713	0.95
4	17	0.00078	0.083	13.8	2.1	3	23	722	743	721	743	0.98
5	17	0.0018	0.19	12.6	1.5	2	23	751	773	750	773	0.96
6	17	8.1e-05	0.0087	16.9	0.7	1	23	779	802	779	802	0.94
7	17	0.2	21	6.2	0.6	2	23	810	830	810	830	0.96
8	17	5.4e-07	5.8e-05	23.7	2.3	2	23	836	857	835	857	0.97
9	17	4.4e-06	0.00046	20.9	0.3	1	23	863	885	863	885	0.99
10	17	0.00027	0.029	15.2	2.4	2	23	897	919	896	919	0.95
11	17	0.0035	0.37	11.7	3.3	1	23	925	948	925	949	0.95
12	17	0.01	1.1	10.3	1.4	2	23	964	986	963	986	0.94
13	17	3.6e-05	0.0038	18.0	0.4	2	23	993	1015	992	1015	0.97
14	17	0.00013	0.013	16.3	1.7	3	23	1024	1044	1023	1044	0.98
15	17	0.001	0.11	13.4	2.3	1	23	1050	1073	1050	1073	0.96
16	17	1.1	1.2e+02	3.8	4.1	2	23	1080	1101	1079	1101	0.96
17	17	0.0082	0.87	10.5	2.6	1	23	1107	1129	1107	1129	0.98

Sequence Information

Coding Sequence: ATGTTTTCTTCTACAAGCAGTAGATGTGATCACAATTACAGCGGGGTGGAGCCTTCTCTACTCGCAAGCAATAGCGATGATGCTTCTAAGACAAGTACGGAATCTCAGAAGTCATCAATCTCATTTATAAGGGATGACAATGACACTTGCCAGCAAAAAATGTTGCCTATTTCAGAAAAGACACGTCAAGCACTAACAAAATATTGCCGTACTTGTGCTAGTATAAAAATGCCCTTGATTGATATTTTTAGCAAGAAGGGTATGGAAATGCGACTAAGTCAACAAATTAAACATCTATATCAGATCAATCGTAATAGTCTTTCTACACAAATGTGTATAGACTGCATCTACGATCTTAAAATGAGCTACAAATTTTTTACGCAAATCAAAAAAGCTGAAAGAAAACTTGCATTTATCTATAATAATTTAAGCAAGGAACTTCTAGACAAGGAATCTTATCCAAAACAACAGGAAAAACAATCATGTTATATAGAAAAAGAAGTACCACCTTCTAAATATCAGAAAGATTCTTTCGTCCCGGAAACACAAAGTTGCCAATCATTTACAACACAACTAAACTCTCAAAACTCAACAATTTCTAAAAATGAAGAAAAAAGCGACTCTGTTTCCAGAACTATCGTTAAGATAGTTCCACTGCAAAATGAGCCGGAAAACGATTCTAGAGCGAAGGAAGACAAACAGGTGGATAAGAATATTATCGAAGTAACTAGGGAGGATGATGAGGATTCTATCGTAGAATTTGATCCCGAAGATCAATCTACACAGGAAAATGAAGAAGTACAAGTATCTTCAAATTCCTCTGTCACAATTTACACATACGATACAGCAGCTGAGTCCTATGTGATGGTGGAAAATGATAAGGCGAAAACTTCTCTAACACCCGAGGTCTCTCAGATCTTAACAAATGAGGAAGAAAAGCAAAAAGAGGAAACAAGGCAGCCGAATATTCTGAAAAGAAGGTTACTAATGCCATCTACGAAAAAAGACGAGGTGGAAGATGCAGCACAAAATGGAGTAGAGGATTCTTCACAGGATGCTCCAAAGGACTGTAAAATACAAAAGATGGATTTAAGTAATCCGTTGAATGTGAATGTTCCGAATGAGGACGGGATTATGTACATGACTATGAAAGGATCAGCAAACAGCACCCTATTGATGAAGGTTAAAAAAGTGGATAAACCTGTGGAACCAAAACGTTTCCTTGTACGCTATAATCAAGCAGGAACATCTCAACGTACTGATTCTCGCGAACAAATAATTGAGGAACAAATTGAAGAGTATAAAAAGAAACGAGAAAAAGTTCTCGGTAATCAGTCACCAGCCACTTTAATAGCGAACGCAAAAGAAGTTCAACCACAAAAAGAAGTGTCGACGCAAAAAGAGGTTCCAACGCAAAAAGAAATCCCAACGCAAAAAGAAGTTCCAATGCAAAAAAAAGTTCCAACGCAAGAAGAAGTTCCTGTCCCGGTCAAGCTTGAAAGCATAGAAATATCGGACGACGATAAAACAGAAGAGACTGAGAAAACGGACGAAGATCAGGAGAAAGTAGATGCCAGTACAGACGAATATGCTTCGAGATTATCAAAATTGAAACAGAAGTGGGAAGAGGCGAGACGAAAGAAAATAAGCTCGCAGAAGAAAGACTTGAATGAATCATATAACGAAGAAAATTTAGAGAGATTGGCCAAAGTTTTAGGAAATAACAATACAAACTTAAAGGAGTTTCTGGATTATCTAAAGCAACGAAAGATTGTGCTTACACGTCTCAAAGATGAAGATATAATTTCTCTCTACGAAGATCGTTTTTCTATAAAATCAATTGTTAAACCTCTTCCGGATCTTATTGATACTCAGCCACCGAGTGATGCTCTTTCGGAAGAAAATTATTTTGACTGCGATTATTGTCCAAAAATCTTTTCTACCTGTGAGAAACTTGAGGAACATCTTAAATCACACGATTATCACATCCTTCATTATTGTGAGGACTGCGGGGAAGAGTTTTCGACACAGAAAGCAAAGAGATGTCATAGTGTCATATGTGTGAAAAAGTTGATTTGCCAATATTGCGACATTATTTTTGAAGGCAAAGGGAAAAAGCGTCAACATGAGCAAAAACATATAGATGATCTTTACGGTCAGCTTTGCGAGTTTTGTGGAGAGAAATTCAAACATCAGGGCACGTTGGATCAGCACGTTAAAACTCGTCATACGATCTTAGAGAAAACCATACAATGTCCGAAATGTCCGAAAAAATTTACGATGAAGCAAAAGTTGAGTTTCCACATGAAATCTGTCCACACGACCTCAAGAGCGTATCTTTGTGAAGACTGCGGAGCAGATTTTAAGAATCCCGCGAGTTTGAGACATCATAGAATCAGGAAACATCAATTAGTTGGAAACAAAAGGGAATGTCCGGTTTGCAGAAAAGTAGTGCCTTTTTATGGTTTATCCAAACATATGCATACACACAAAGCTTACAGTATTCAATGTCCGCACTGCGACAAGATGTTCAAAAACACATCGACTTTGAAGCAACATGTGAGGATTCATGAAGATCAAAGACAGTATCGTTGCGATACCTGCGGAGTTGGTTTTAATCGAAGAGACGGTTTAAGACTGCACATGAAGGTGCACGAAAAGTCGGGCAGCAGAGGTTTGAAAGAGTGTTCTTGCCAAATTTGTGGAGAGAAGTTTCCAAATCACTCGACTTTGGTGATTCATAGAAACCGAGTACACAAAGATGGGAGACAGTATACCTGTCACATTTGCAATAGATCAATGATCTCGTCGAGGTCGCTTGAATGGCACATGGCACATATTCATCATCAGTCGATGCCAGGCTCCACTAACGAATCCGAACAACGGGTTTCTTGCTATCAATGCAATAAAACATTCAAAACGGAAATGATCTTACGAACGCACATCAAGAACACACACATAATCAAAGACCCGGTAAAATGTCCCGATTGCGATCTCATGTTCAAATCTGAAGTGCGTTTACGCCATCACATGATGGTCGCGCACAACCGTTTGGAAGGCACTTTATTATGTCCGCATTGTCCGAAACGTTTTGTCAATCAATTGAGACTTAAGACTCATATGATTTCTCATTCCGAAGAAAGACCGTACACTTGCGAGATCTGTGGTTTTAATCTCAAGACGAAGATTCAACTGATCAAACATCATCAGAACCGACACAGTGATGAGAGACCTCTGCAGTGCAGATACTGTTCTTGGCGATGCAAGCAAGTGAGTGCTCTCGTCTGTCACGAGCGCACGCATACCAATGAGCGCCCATACTCGTGTAGCGTGTGCCGGCAGCGCTTCAAATATCTAGGTGACAAAAACAAACATGAGCGGCGTCACGAAAGTCTTGGTGGTTCAGGATTCAAACGTATTGTGCCAGTGAGAACTGTTAAAGCAAAAGAACAACGTACTGACGATTCTTCCGTATCTGAGCAAGACCAAGGTTCTCAGGACTCTATAGTTACCCAAGATACTCAAAAATTATATGAAGAGCAACAGACACAGGAAGTCAACAGAGAACAGGTCGAATTGAAGCATGAAATTGATATCGAGACTGCTGAAAGCAGTTACGAACAGAAATACGAAGAAAGTTCGAGAGAAACATCGGAAGCTACAGAATTAATAATGAACATGGAAGATTCCAATGTATATACAGAGGAAGTAACAGCTGATAGTATAGAGTCCAATGTGGAGATTATAACGGACGAGATAATGACGAATGACATTTTGCAATCAGGAACTACAGCTGTGGTACATCTGCAGGAAGACGATACAGGAAAGATTCAAGTGATACCTGTGATGCTTGATCTGTCTGATGCAAACACTGAGGTCGCTCTTCCAACCGCGTCTATTATGTATAACAATTAA
Protein Sequence: MFSSTSSRCDHNYSGVEPSLLASNSDDASKTSTESQKSSISFIRDDNDTCQQKMLPISEKTRQALTKYCRTCASIKMPLIDIFSKKGMEMRLSQQIKHLYQINRNSLSTQMCIDCIYDLKMSYKFFTQIKKAERKLAFIYNNLSKELLDKESYPKQQEKQSCYIEKEVPPSKYQKDSFVPETQSCQSFTTQLNSQNSTISKNEEKSDSVSRTIVKIVPLQNEPENDSRAKEDKQVDKNIIEVTREDDEDSIVEFDPEDQSTQENEEVQVSSNSSVTIYTYDTAAESYVMVENDKAKTSLTPEVSQILTNEEEKQKEETRQPNILKRRLLMPSTKKDEVEDAAQNGVEDSSQDAPKDCKIQKMDLSNPLNVNVPNEDGIMYMTMKGSANSTLLMKVKKVDKPVEPKRFLVRYNQAGTSQRTDSREQIIEEQIEEYKKKREKVLGNQSPATLIANAKEVQPQKEVSTQKEVPTQKEIPTQKEVPMQKKVPTQEEVPVPVKLESIEISDDDKTEETEKTDEDQEKVDASTDEYASRLSKLKQKWEEARRKKISSQKKDLNESYNEENLERLAKVLGNNNTNLKEFLDYLKQRKIVLTRLKDEDIISLYEDRFSIKSIVKPLPDLIDTQPPSDALSEENYFDCDYCPKIFSTCEKLEEHLKSHDYHILHYCEDCGEEFSTQKAKRCHSVICVKKLICQYCDIIFEGKGKKRQHEQKHIDDLYGQLCEFCGEKFKHQGTLDQHVKTRHTILEKTIQCPKCPKKFTMKQKLSFHMKSVHTTSRAYLCEDCGADFKNPASLRHHRIRKHQLVGNKRECPVCRKVVPFYGLSKHMHTHKAYSIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKSGSRGLKECSCQICGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISSRSLEWHMAHIHHQSMPGSTNESEQRVSCYQCNKTFKTEMILRTHIKNTHIIKDPVKCPDCDLMFKSEVRLRHHMMVAHNRLEGTLLCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCSWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPVRTVKAKEQRTDDSSVSEQDQGSQDSIVTQDTQKLYEEQQTQEVNREQVELKHEIDIETAESSYEQKYEESSRETSEATELIMNMEDSNVYTEEVTADSIESNVEIITDEIMTNDILQSGTTAVVHLQEDDTGKIQVIPVMLDLSDANTEVALPTASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267026;
90% Identity: iTF_01271403;
80% Identity: -