Basic Information

Insect: Pseudomyrmex gracilis
Gene Symbol: -
Assembly: GCA_002006095.1
Location: NW:10925-17639[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.8e-05 0.0011 18.6 1.7 1 23 657 679 657 679 0.97

2 17 0.15 8.7 6.3 2.2 1 14 685 698 685 703 0.90

3 17 0.13 7.9 6.5 0.4 2 23 712 733 711 733 0.95

4 17 0.00065 0.039 13.7 2.1 3 23 742 763 741 763 0.98

5 17 0.0028 0.17 11.7 1.2 2 23 771 793 770 793 0.95

6 17 6.8e-05 0.004 16.8 0.7 1 23 799 822 799 822 0.94

7 17 0.16 9.8 6.2 0.6 2 23 830 850 830 850 0.96

8 17 4.5e-07 2.7e-05 23.7 2.3 2 23 856 877 855 877 0.97

9 17 3.6e-06 0.00022 20.8 0.3 1 23 883 905 883 905 0.99

10 17 0.00023 0.013 15.2 2.4 2 23 917 939 916 939 0.95

11 17 0.0029 0.17 11.7 3.3 1 23 945 968 945 969 0.95

12 17 0.0084 0.5 10.2 1.4 2 23 984 1006 983 1006 0.94

13 17 3e-05 0.0018 18.0 0.4 2 23 1013 1035 1012 1035 0.97

14 17 0.0001 0.0062 16.2 1.7 3 23 1044 1064 1043 1064 0.98

15 17 0.00087 0.052 13.4 2.3 1 23 1070 1093 1070 1093 0.96

16 17 1 60 3.7 4.3 2 23 1100 1121 1099 1121 0.96

17 17 0.0068 0.41 10.5 2.6 1 23 1127 1149 1127 1149 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.8e-05	0.0011	18.6	1.7	1	23	657	679	657	679	0.97
2	17	0.15	8.7	6.3	2.2	1	14	685	698	685	703	0.90
3	17	0.13	7.9	6.5	0.4	2	23	712	733	711	733	0.95
4	17	0.00065	0.039	13.7	2.1	3	23	742	763	741	763	0.98
5	17	0.0028	0.17	11.7	1.2	2	23	771	793	770	793	0.95
6	17	6.8e-05	0.004	16.8	0.7	1	23	799	822	799	822	0.94
7	17	0.16	9.8	6.2	0.6	2	23	830	850	830	850	0.96
8	17	4.5e-07	2.7e-05	23.7	2.3	2	23	856	877	855	877	0.97
9	17	3.6e-06	0.00022	20.8	0.3	1	23	883	905	883	905	0.99
10	17	0.00023	0.013	15.2	2.4	2	23	917	939	916	939	0.95
11	17	0.0029	0.17	11.7	3.3	1	23	945	968	945	969	0.95
12	17	0.0084	0.5	10.2	1.4	2	23	984	1006	983	1006	0.94
13	17	3e-05	0.0018	18.0	0.4	2	23	1013	1035	1012	1035	0.97
14	17	0.0001	0.0062	16.2	1.7	3	23	1044	1064	1043	1064	0.98
15	17	0.00087	0.052	13.4	2.3	1	23	1070	1093	1070	1093	0.96
16	17	1	60	3.7	4.3	2	23	1100	1121	1099	1121	0.96
17	17	0.0068	0.41	10.5	2.6	1	23	1127	1149	1127	1149	0.98

Sequence Information

Coding Sequence: atgttttcttctACAAGCAGTAGATGCGATCACAATTACAGTGGGGTGGAGCCTTCTCTACTCGCAAGCAATAGCGATGATGCTTCTAAGACAAGTACAGAATCCCAAAAGTCATCAGTCTCATTTATAAGGGATGACAATGACATTTGCCAACAGAACATGTTGCCTATTTCAGAAAAGACACGTCAAGCACTAACAAAATATTGTCGTACGTGTGCTGGTATAAAAATGCCCTTgatTGATATTTTTAGCAAGAAGGGTATGGAAATGCGACTAAGTCAACAAATTAAACATCTATATGAGATCAATCGTAATAGTCTCTCAACACAAATGTGTATAGATTGCATCTACGATCTTAAAATGAGTTACAAATTTTTCACGCAAATCAAAAAAGCTGAGAGAAAACTCGCGTTTATCCATAATAATTTGAGCAAGGAATTTTTGGATAAAGAATCTTATTCAAAACATCAGGAAAAACAATCATGTTATATAGaaaaagAGGTACCATCTTATAAGTATCAGAAAGATTCTTTCGTCCCGGAAACACAGAGTCGCCAATCGTTTACAATACAACAAAACTTCCAAACCTCAACAACTTctaaaaatgaagaagaaagCGAGTCTGTTTCCAAAACTATCGTTAAGATAGTTCCACTGCAAAATGAGCCGGAAAATGATTCTAGAGTGAAAGAAGACAATCAGGTGAATAAGGATATCGAAGTGACTAAGGAGGACGATGAGGATTCTATCGTGGAATTTGATCCCGAAGATCAGTCTACACAGGAAAATGAAGAAGTGCAAATATCTTCAAATTCCTCTGTCACAATTTACACATACGACACAGCAGCTGAATCCTATGTGATGGTGGAAAATGATAAGGAAACGAAAACTTCCTTAACACCCGAGGTCTCTCAGATCGTAACGAATGAGGAAGAAAAGCAAAAAGAGGAAACAAGACAGCCGAATATTCTGAAAAGAAGATTACTAATGCCTTCtacgaagaaagaagaggCGGAAGACGCAGCACAGAATGGAGCAGAAGATTCTTCACAGGATGCTCCACAGgaatgtaaaatacaaaaattagaCTTAAGTAATCCGTTGAATGTGAATGTTGTTCCGAATGAGGACGGGATTATGTACATGACTATGAAAGGATCAGCAAACAGCACTCTATTGATGAAgGTTAAAAAAGTGGATAAACCTAAAGCGGAACCAAAACGTTTCCTTATACGCTATGGTCAAGCAGGAACATCTCAACGCACTGATTCTcgcgaacaaaaaattgaGGAACAAATTGAAGagtataaaaagaaacgagaaaaagtTCTCGGTAATCAGTCAACAGCCACTTTAATAGCAAACGCAAAAGAAGTTCAACCACAAAAGGAAGTTTTGACTCAAAAGGAAGTTCCAACGCAAAAGGAAGTTTCGACGCAAAAAGAAGTTTCGACGCAAAAAGAAGTTCCGACGCAAAAAGAAATTCCAACGCAAAAAGAAGTTccaatgcaaaaaaaagttccAACGCAGGAAGAAGTTCCTGTCCAAGTCAAGCTTGAAAGCATAGAAATATCGGATGACGATAAAGCAGAAGAGACTGAGAAAACGGACGAAGATCAGGAGAGAGTAGATGGCAACACCGATGAATATGCTTCGAGATTATCGAAATTGAAACAGAAGTGGGAAGAGGCAAGACGAAAGAAAATAAGTTTGCAAAAGAAAGACTTGAATGAGTCGTATAGCGAAGAAAATTTAGAGAGATTGGCCAAGGTTTTAGGAAGTAACAATACGAACTTGAAGGAGTTTCTGGATTATCTAAAGCAACGAAAGATTGTACTTACACGTCTCAAGGATGAAGATATAATTTCTCTCTACGAAGAtcgtttttctataaaatcaaTTGTTAAACCCCTTCCGGACCTTATTGATACTCAGCCACCGAGTGATGCTCTTCccgaagaaaattattttgattgcGATTATTGTCCGAAAACTTTTCCTACGTGTGAAAAACTTGAGGAACATCTCAAGTCGCACGATTATCACATTCTTCATTATTGTGAGGACTGCGGGGAAGAGTTTTCGACGCAGAAAGCAAAGAGATGTCATAGTGTCATATGTGTGAAAAAGTTGATTTGCCAATATTGcgacattatttttgaaggCAAAGGGAAAAAGCGTCAACATGAGCAAAAACATATTGATGATCTTTACGGTCAACTGTGCGAGTTCTGTGGAGAAAAATTCAAACACCAGGGCACATTGGATCAGCACGTTAAAACTCGTCACACGATCTTAGAGAAAACCATACAATGTCCGAAATGCCCGAAAAAATTTACGATGAAGCAAAAATTGAGCTTTCACATAAAATCTGTTCACACAACTTCGAGAGCGTATCTTTGTGAAGACTGCGGAGCAGATTTTAAGAATCCTGCCAGTTTGAGACATCATAGAATCAGAAAACATCAATTGGTTGGAAACAAGAGAGAATGTCCAGTTTGTAGAAAAGTAGTGCCTTTTTATGGTTTGTCTAAACACATGCATACACACAAGGCTTACAGTATTCAATGTCCGCACTGCGacaaaatgttcaaaaacACCTCGACTTTGAAGCAACACGTGAGAATTCACGAAGATCAAAGGCAATATCGTTGCGATACCTGCGGAGTTGGTTTTAATCGAAGAGACGGTTTAAGACTGCACATGAAAGTGCATGAAAAATCGGGCAGCAGAGGTTTGAAAGAGTGTTCCTGCCAAATTTGTGGAGAGAAGTTCCCAAATCACTCGACTTTGGTGATTCACAGAAACCGAGTACACAAGGATGGGAGACAGTATACCTGTCACATTTGCAACAGATCAATGATCTCGTCGAGATCGCTTGAATGGCACATGGCACATATTCATCATCAGTCAATGCCGGGCTCCACTAACGAATCCGAACAACGAGTATCTTGCTATCAATGCAATAAAACATTCAAAACGGAAATGATCTTACGAACGCACATCaagaacacacacataatCAAAGACCCAGTAAAATGTCCCGATTGCGATCTCATGTTCAAGTCTGAAGTGCGTTTACGCCATCACATGATGGTCGCGCACAACCGTTTGGAAGGCACTTTACTATGTCCTCATTGTCCGAAACGTTTCGTCAACCAATTGAGACTCAAGACTCATATGATTTCGCATTCTGAAGAAAGACCGTACACTTGCGAGATTTGTGGTTTTAATCTCAAGACGAAGATTCAACTGATCAAACATCATCAGAATCGACACAGTGATGAAAGACCACTACAATGCAGGTACTGCACTTGGCGATGCAAGCAAGTAAGCGCTCTCGTCTGTCACGAGCGTACGCATACCAATGAACGTCCATACTCGTGTAGTGTGTGCCGGCAGCGCTTCAAATATCTAGgtgacaaaaacaaacatgaGCGGCGTCACGAAAGCCTTGGTGGTTCTGGATTCAAACGTATTGTGCCAGTGAGAACTGTTAAAGCGAAAGAACAACGTACTGACGATTCTTCCATATCTGAGCAAGACCAAGGTTCTCAGGACTCCATAGTTACCCAAGATActcaaaaattatatgaagGGCAACAGACACAGGATATCAACAGAAAACAGGTCGAATTGAAGCATGAAATTGATATCGAGACTGCTGAAGGTTATGAACAGAAATACGAGGAAAGCTCGAGAGAAACGTCGGAAGCTACAGAATTAATAATGAACATGGAAGATTCTAATGTATATACGGAGGAAGTAACAGCTGATAGTATAGAGTCCAACGTGGAGATTATAACGGACGAGATAATGACGAATGACATTTTGCAGTCGGGTACTACAGCTGTGGTACATCTGCAAGAAGACGATACAGGGAAGATTCAAGTGATACCTGTGATGCTTGATCTGTCTGATGCAAACACTGAGGTCGCTCTTCCAACTACGTCTATTatgtacaataattaa
Protein Sequence: MFSSTSSRCDHNYSGVEPSLLASNSDDASKTSTESQKSSVSFIRDDNDICQQNMLPISEKTRQALTKYCRTCAGIKMPLIDIFSKKGMEMRLSQQIKHLYEINRNSLSTQMCIDCIYDLKMSYKFFTQIKKAERKLAFIHNNLSKEFLDKESYSKHQEKQSCYIEKEVPSYKYQKDSFVPETQSRQSFTIQQNFQTSTTSKNEEESESVSKTIVKIVPLQNEPENDSRVKEDNQVNKDIEVTKEDDEDSIVEFDPEDQSTQENEEVQISSNSSVTIYTYDTAAESYVMVENDKETKTSLTPEVSQIVTNEEEKQKEETRQPNILKRRLLMPSTKKEEAEDAAQNGAEDSSQDAPQECKIQKLDLSNPLNVNVVPNEDGIMYMTMKGSANSTLLMKVKKVDKPKAEPKRFLIRYGQAGTSQRTDSREQKIEEQIEEYKKKREKVLGNQSTATLIANAKEVQPQKEVLTQKEVPTQKEVSTQKEVSTQKEVPTQKEIPTQKEVPMQKKVPTQEEVPVQVKLESIEISDDDKAEETEKTDEDQERVDGNTDEYASRLSKLKQKWEEARRKKISLQKKDLNESYSEENLERLAKVLGSNNTNLKEFLDYLKQRKIVLTRLKDEDIISLYEDRFSIKSIVKPLPDLIDTQPPSDALPEENYFDCDYCPKTFPTCEKLEEHLKSHDYHILHYCEDCGEEFSTQKAKRCHSVICVKKLICQYCDIIFEGKGKKRQHEQKHIDDLYGQLCEFCGEKFKHQGTLDQHVKTRHTILEKTIQCPKCPKKFTMKQKLSFHIKSVHTTSRAYLCEDCGADFKNPASLRHHRIRKHQLVGNKRECPVCRKVVPFYGLSKHMHTHKAYSIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKSGSRGLKECSCQICGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISSRSLEWHMAHIHHQSMPGSTNESEQRVSCYQCNKTFKTEMILRTHIKNTHIIKDPVKCPDCDLMFKSEVRLRHHMMVAHNRLEGTLLCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCTWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPVRTVKAKEQRTDDSSISEQDQGSQDSIVTQDTQKLYEGQQTQDINRKQVELKHEIDIETAEGYEQKYEESSRETSEATELIMNMEDSNVYTEEVTADSIESNVEIITDEIMTNDILQSGTTAVVHLQEDDTGKIQVIPVMLDLSDANTEVALPTTSIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267026;
90% Identity: iTF_01271403;
80% Identity: -