Basic Information

Insect: Pseudomyrmex cubaensis
Gene Symbol: -
Assembly: GCA_014825685.1
Location: QVOA01011836.1:2586-7608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.8e-05 0.003 18.3 1.8 1 23 663 685 663 685 0.97

2 17 0.18 19 6.3 2.2 1 14 691 704 691 709 0.90

3 17 0.16 18 6.5 0.4 2 23 718 739 717 739 0.95

4 17 0.00079 0.086 13.7 2.1 3 23 748 769 747 769 0.98

5 17 0.0018 0.2 12.6 1.5 2 23 777 799 776 799 0.96

6 17 8.2e-05 0.009 16.8 0.7 1 23 805 828 805 828 0.94

7 17 0.2 22 6.2 0.6 2 23 836 856 836 856 0.96

8 17 5.5e-07 6e-05 23.7 2.3 2 23 862 883 861 883 0.97

9 17 4.4e-06 0.00048 20.8 0.3 1 23 889 911 889 911 0.99

10 17 0.00027 0.03 15.2 2.4 2 23 923 945 922 945 0.95

11 17 0.2 22 6.2 1.2 1 23 951 974 951 975 0.93

12 17 0.01 1.1 10.2 1.4 2 23 990 1012 989 1012 0.94

13 17 0.00013 0.014 16.2 0.4 2 23 1019 1041 1018 1041 0.97

14 17 0.00013 0.014 16.2 1.7 3 23 1050 1070 1049 1070 0.98

15 17 0.001 0.11 13.3 2.3 1 23 1076 1099 1076 1099 0.96

16 17 6.2 6.7e+02 1.5 4.4 2 23 1106 1127 1105 1127 0.96

17 17 0.0083 0.9 10.5 2.6 1 23 1133 1155 1133 1155 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.8e-05	0.003	18.3	1.8	1	23	663	685	663	685	0.97
2	17	0.18	19	6.3	2.2	1	14	691	704	691	709	0.90
3	17	0.16	18	6.5	0.4	2	23	718	739	717	739	0.95
4	17	0.00079	0.086	13.7	2.1	3	23	748	769	747	769	0.98
5	17	0.0018	0.2	12.6	1.5	2	23	777	799	776	799	0.96
6	17	8.2e-05	0.009	16.8	0.7	1	23	805	828	805	828	0.94
7	17	0.2	22	6.2	0.6	2	23	836	856	836	856	0.96
8	17	5.5e-07	6e-05	23.7	2.3	2	23	862	883	861	883	0.97
9	17	4.4e-06	0.00048	20.8	0.3	1	23	889	911	889	911	0.99
10	17	0.00027	0.03	15.2	2.4	2	23	923	945	922	945	0.95
11	17	0.2	22	6.2	1.2	1	23	951	974	951	975	0.93
12	17	0.01	1.1	10.2	1.4	2	23	990	1012	989	1012	0.94
13	17	0.00013	0.014	16.2	0.4	2	23	1019	1041	1018	1041	0.97
14	17	0.00013	0.014	16.2	1.7	3	23	1050	1070	1049	1070	0.98
15	17	0.001	0.11	13.3	2.3	1	23	1076	1099	1076	1099	0.96
16	17	6.2	6.7e+02	1.5	4.4	2	23	1106	1127	1105	1127	0.96
17	17	0.0083	0.9	10.5	2.6	1	23	1133	1155	1133	1155	0.98

Sequence Information

Coding Sequence: ATGTTTTCTTCTACAAGCAGTAGATGTGATCACAATTACAGCGGGGTGGAGCCTTCTCTACTCGCAAACAATAGCGATGATGCTTCTAAAACAAGTACAGAATCCCAGAAGTCATCAGTTTCATTTATAAGGGATGACAATGACACTTGCCAGCAAAAAATGTTGTCTATTTCAGAAAAGACACGTCAAGCACTAACAAAATATTGCCGTACCTGTGCTGGTATAAAAATGCCCTTGATTGATATTTTTAGCAAGAAGGGTATGGAAATGCGACTAAGTCAACAAATTAAACATCTATATGAGATCAATCGTAATAGTCTTTCCACACAAATGTGTATAGACTGCATCTACGATCTTAAAATGAGCTACAAATTTTTTACACAAATCAGAAAATCTGAAAGAAAACTTGCATTTATCTTTAATAATTTAAGCAAGGAATTTTTAGACAAAGAACCTGATCCAAAACAACAGGAAAAACAATCATGTTATATAGAAAAAGAAGTACCATCTTCTAAATATCAGAAAGATTCTTTCATCTCGGAAACACAGAGTCGCCAATCATTTACAACACAACAAAACTCTCAAAACTCAACAAATTCTAAAAATGAAGAAGAAAGCGATTCTGTTTCCAGAAATATCGTTAAGATAGTTCCACTGCAAAATGAGCCGGAAAACGATTCTAGAGCGAAGGAAGACAAACAAGTGGATAAGAATATTATCGAAGTAACTACGGTGGATAAGAATATTATCGAAGTAACTACGGTAGATAAGAATATTATCGAAGTAACTAGAGAGGATGATGAGGATTCTATCGTGGAATTTGATCCCGAAGATCAATCTACACAGGAAAATGAAGAAGTACAAATATCTTCAAATTCCTCTGTCACAATTTACACATACGATACAACAGCTGAGTCTTATGTGATGGTGGAAAATGATAAGGCGAAAACTTCTCTAACACCCGAGGTCTCTCAGATTTTAACAAATGAGGAAGAAAAGCAAAAAGAGGAAACAAGGCAGCCGAATATTCTGAAAAGAAGGTTACTAATGCCATCTACGAAAAAAGACGAGGCGGAAGATGCAGCACAAAATGGAGTAGAAGATTCTTCACAGGATACTCCAAAGGACTGTAAACTACAAAAACTGGACTTAAATAATCCGTTGAATGTGAATGTTGCTCCGAATGAGCACGGAATTATGTACATGACTATGAAAGGATCAGCAAACAGCACTCTATTGATGAAGGTTAAAAAAGTGGATAAACCTGTAGAACCAAAACGTTTCCTTGTACGCTATAATCAAGCAGGAACATCTCAACGTACTGATTCTCGCGAACAAATAATTGAGGAACAAATTGAAGAGTATAAAAAGAAACGAGAAAAAGTTCTCGGTAATCAGTCACCAGCCACTTTAATAGCGAACGCAAAAGAAGTTCAACCACAAAAAGAAGTGTCGACGCAAAAAGAGGTTCCAACGCAAAAAGAGGTTCCAACGCAAAAAGAAATCCCAACGCAAAAAGAAGTTCCAATGCAAAAAAAAGTTCCAACGCAAGAAGTTCCAGTCCAAGTCATGCCTGAAAGCATAGAAATATCGGATGACGATAAAACAGAAGAGACTGAGAAAACGGACGAAGATCAGGAGAAAGTAGATGCCAATACAGACAAATATGCTCTGAGATTATCAAAATTGAAACAGAAGTGGGAAGAGGCGAGACGAAAGAAAATAAGCTTGCAGAAGAAAGACTTGAATGAGTCATATAACGAAGAAAATTTAGAAAGATTAGCCAAAGTTTTAGGAAGTAACAATACAAATTTGAAGGAATTTCTGGATTATCTAAAGCAACGAAAGATTGTGCTTACACGTCTCAAAGATGAAGATATAATTTCTCTCTACGAAGATCGTTTTTCTATAAAATCAGTTGTTAAACCCCTTCCGGATCTTATTGACACTCAGCCACCGAGTGATGCTCTTCCGGAAGAAAATTATTTTGACTGCGATTACTGTCCGAAAATTTTTTCTACCTGTGAGAAACTTGAGGAACATCTTAAATCACACGATTATCACATCCTTCATTATTGTGAGGACTGCGGGGAAGAGTTTTCGACACAGAAAGCAAAGAGATGTCATAGTGTCATATGTGTGAAAAAGTTGATTTGCCAATATTGCGACATTATTTTTGAAGGCAAAGGGAAAAAGCGTCAACATGAGCAAAAACATATAGATGATCTTTACGGTCAGCTTTGCGAGTTTTGTGGAGAGAAATTCAAACACCAGGGCACATTGGATCAGCACGTTAAAACTCGTCACACAATCTTAGAGAAAACCATACAATGTCCTAAATGTCCGAAAAAATTTACGATGAAGCAAAAATTGAGTTTTCACATGAAATCTGTCCACACGACCTCGAGAGCGTATCTTTGTGAAGACTGTGGAGCAGATTTTAAGAATCCCGCAAGTTTGAGACATCATAGAATCAGAAAACATCAATTGGTTGGAAATAAGAGGGAATGTCCGGTTTGCAGAAAAGTAGTGCCTTTTTATGGTTTATCCAAACACATGCATACACACAAGGCTTACAGTATTCAATGTCCGCACTGCGACAAGATGTTCAAAAACACATCGACTTTGAAGCAGCACGTGAGGATTCACGAAGATCAAAGGCAGTATCGTTGCGATACCTGCGGAGTTGGTTTTAATCGAAGAGACGGTTTAAGACTGCACATGAAGGTGCACGAAAAATCGGGCAGCAGAGGTTTGAAAGAGTGTTCTTGCCAAATTTGTGGAGAGAAGTTCCCAAATCACTCGACTTTAGTGATTCACAGAAACCGAGTACACAAGGATGGGAGACAGTATACCTGCATTATTTGTAACAGATCAATGATCTCGTCGAGATCGCTTGAATGGCACATGGCACATATTCATCATCAGTCGATGCCAGGCTCCACTAACGAATCCGAACAACGAGTTTCTTGCTATCAATGCAATAAAACATTCAAAACGGAAATGATCTTACGAACGCACATCAAGAACACACACATAATCAAAGACCCGGTAAAATGTCCCGATTGCGAGCTCATGTTCAAATCTGAAGTGCGTTTACGCCATCACATGATGGTCGCGCACGACCGTTTGGAAGGCACTTTATTATGTCCGCATTGTCCGAAACGTTTCGTCAATCAATTGAGACTTAAAACTCATATGATATCTCATTCCGAGGATAGACCGTACACTTGCGAGATTTGTGGTTTTAATCTCAAGACAAAGATTCAACTGATCAAACATCATCAGAACCGACACAGCGATGAGAGACCTTTGCAGTGCAGATTCTGTTCTTGGCGATGCAAGCAAGTGAGTGCTCTCGTCTGTCACGAGCGTACGCATACCAATGAGCGTCCGTACTCGTGTAGCGTGTGCCGGCAGCGCTTCAAATATCTAGGTGACAAAAACAAACATGAACGGCGTCACGAAAGTCTTGGTGGTTCAGGATTCAAACGTATTGTGCCAGTGAGAACTGTTAAAGCGAAAGAACAACGTACTGACGATTCCTCCGTATCTGAGCAAGACCAAGGTTCTCAAGACTCTATAGTTGCCCAAGATACTCAAAAATTATATGAAGGGCAACAGACACAGGAATTCAACAGAGAACAGGCCGAATTGAAGCATGAAATTGATATCGAGACTGCTGAAGGTTACGAACAGAAATACGAGGAAAGTTCGAGAGAAACATCGGAAGCTACAGAATTAATAATGAACATGGAAGATTCCAATGTATATACAGAAGAAGTAACAGCTGATAGTATAGAGTCCAATGTGGAGATTATAACAGACGAGATAATGACGAATGACATTTTGCAATCGGGAACTACAGCTGTGGTACATCTGCAGGAAGATGATACAGGGAAATTTCAAGTGATACCTGTGATGCTTGACCTGTCTGATGCAAACACTGAGGTCGCTCTTCCAACCGCGTCTATTATGTATAATAATTAA
Protein Sequence: MFSSTSSRCDHNYSGVEPSLLANNSDDASKTSTESQKSSVSFIRDDNDTCQQKMLSISEKTRQALTKYCRTCAGIKMPLIDIFSKKGMEMRLSQQIKHLYEINRNSLSTQMCIDCIYDLKMSYKFFTQIRKSERKLAFIFNNLSKEFLDKEPDPKQQEKQSCYIEKEVPSSKYQKDSFISETQSRQSFTTQQNSQNSTNSKNEEESDSVSRNIVKIVPLQNEPENDSRAKEDKQVDKNIIEVTTVDKNIIEVTTVDKNIIEVTREDDEDSIVEFDPEDQSTQENEEVQISSNSSVTIYTYDTTAESYVMVENDKAKTSLTPEVSQILTNEEEKQKEETRQPNILKRRLLMPSTKKDEAEDAAQNGVEDSSQDTPKDCKLQKLDLNNPLNVNVAPNEHGIMYMTMKGSANSTLLMKVKKVDKPVEPKRFLVRYNQAGTSQRTDSREQIIEEQIEEYKKKREKVLGNQSPATLIANAKEVQPQKEVSTQKEVPTQKEVPTQKEIPTQKEVPMQKKVPTQEVPVQVMPESIEISDDDKTEETEKTDEDQEKVDANTDKYALRLSKLKQKWEEARRKKISLQKKDLNESYNEENLERLAKVLGSNNTNLKEFLDYLKQRKIVLTRLKDEDIISLYEDRFSIKSVVKPLPDLIDTQPPSDALPEENYFDCDYCPKIFSTCEKLEEHLKSHDYHILHYCEDCGEEFSTQKAKRCHSVICVKKLICQYCDIIFEGKGKKRQHEQKHIDDLYGQLCEFCGEKFKHQGTLDQHVKTRHTILEKTIQCPKCPKKFTMKQKLSFHMKSVHTTSRAYLCEDCGADFKNPASLRHHRIRKHQLVGNKRECPVCRKVVPFYGLSKHMHTHKAYSIQCPHCDKMFKNTSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKSGSRGLKECSCQICGEKFPNHSTLVIHRNRVHKDGRQYTCIICNRSMISSRSLEWHMAHIHHQSMPGSTNESEQRVSCYQCNKTFKTEMILRTHIKNTHIIKDPVKCPDCELMFKSEVRLRHHMMVAHDRLEGTLLCPHCPKRFVNQLRLKTHMISHSEDRPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRFCSWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPVRTVKAKEQRTDDSSVSEQDQGSQDSIVAQDTQKLYEGQQTQEFNREQAELKHEIDIETAEGYEQKYEESSRETSEATELIMNMEDSNVYTEEVTADSIESNVEIITDEIMTNDILQSGTTAVVHLQEDDTGKFQVIPVMLDLSDANTEVALPTASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01267026;
90% Identity: iTF_01271403;
80% Identity: -