Pelo044805.1
Basic Information
- Insect
- Pseudomyrmex elongatus
- Gene Symbol
- -
- Assembly
- GCA_014825605.1
- Location
- QVNY01003107.1:35604-38347[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.54 1.1e+02 5.0 1.6 1 22 351 372 351 375 0.90 2 13 3.4 6.9e+02 2.5 0.1 2 9 395 402 394 406 0.89 3 13 0.026 5.3 9.1 4.1 1 23 442 464 442 464 0.97 4 13 0.00096 0.2 13.6 1.3 2 23 472 494 471 494 0.93 5 13 7.2e-05 0.015 17.2 1.0 1 23 500 522 500 522 0.98 6 13 0.00021 0.043 15.7 4.6 1 23 528 550 528 550 0.99 7 13 0.00011 0.023 16.6 2.7 1 23 556 578 556 578 0.98 8 13 0.019 3.9 9.5 0.4 1 21 591 611 591 614 0.90 9 13 0.00051 0.1 14.5 2.2 1 23 630 653 630 653 0.96 10 13 0.00036 0.074 14.9 1.4 1 23 661 684 661 684 0.97 11 13 1.6e-05 0.0033 19.2 1.1 1 23 690 712 690 712 0.98 12 13 0.00094 0.19 13.6 1.5 1 23 718 741 718 741 0.95 13 13 0.026 5.4 9.1 3.9 1 23 747 770 747 770 0.96
Sequence Information
- Coding Sequence
- ATGGGCATATCAAATGATATGTTGGTGTGTCGTTTGTGTGATATAAAAATTGAGGAAAGACAGTCAAAGTATATCTTTGATGAAGCTGATTTGGCGCAGAAAATAAATGTCACATTGCCAATCAAGGTTGCGCAAGACGATGATAATTCCAAAGTCATATGCTTGAAATGTTATAACAAAGTTATCAGTTATTACGATTTTTGTCAGGACATTTTGAAGTCTGAGAAAAACAGCGACGAGTCAAAAATCAATTGCTTGTTTAAAATAAACAAAAATAAAGAATTAACAACATCTGACATTCTGAACTTAGACAAAGACTTGACGTTTATGTGTCCAAATTGTAACATCTCTCTGATGATACTGATAGATAGCAAACCCAATGACAGCGAACATCCCTTTCAAATTTCATTGGCTGTTGTCGATCAAATGAAAAGATTAATAAGAGAAAACGTCGTTCCAACAAGCAAACCCAAAACGGTAAGAGTTATCAGTCCACAGAAATTGAGCGCAGTAAATAAATTGCATAGCTCGTCATCGAATCGCGATAACTGTACTGAAATTTTTACTAAAATATGCAAAACCTATCCGATAAAAGACGAAGACGACAATTGCGAAGACGCTTGCATCCCGGCAATGAAAAAAGAAAAAGATGCGTCGTCGTTGGATCAAAATTTATCATTAAAGCCTGAAGTCAAGAGAAAAAGAAGTTGTCGCGATTCGGACAAGAAACTCGTTAAAGAAAAACAATCGAAGAACAATGAAGAAAGCGAAATCAAGTATTGGTCGAACAGTGACGACGATTGGTTGCACGGAGTGTCGTCAAATAACGTCAAGTTGACTAACGACAGCGCGGAATTGCCCGAATCTCAGAAGAAGTGGACGTGCCAGATTTGCAGCGCCTCGTATTTCCAAAAACTCAGATACGATTTTCACATGGAAAGGCATGCGTTAAACAAAATGCGCGACACCGTCTGTATAGAGTGCGACTTGAAAATGGTGAACGAGCTGTTGTTGTTCGATCACTATAGGCGTACACACATCTTCACGCAACACACTTGCGTGCAGTGCGACGAGAAATATCTGACCAAGATCGGACTGGAGAATCACCAGAAATTAAAGAAGCACTCCGGCGTCGTGGAGTACGTGATCGATCCGGAAGAGACACAACTATTAAATGTCCTGACTTGCACACTCTGCGGAAAATCAGTGCAGGAAACCGAGATGAACATCTGCAACGACGTGGTCACGTGTCTCGACTGTGACACCTCGATCTCATCGATGATGGTCGACGGATACGAGAAGAGATTCATTGCTCAACGCCAGTTTCACTGCGCGAAATGCAACACGCGGTTCATACGCAAAGATAGACTGGAGTTCCACATGATGCGTCACAACGAGAACAAGGAAGACGTCGTTTGCAGCACGTGTGGCAAGGACTTTTGCACGGAGAACTCTCTGTTCGAACACTACATGTTCGTGCACAAAGGCGCGAGACCGTTTATATGCGAGCTGTGCGGCAAATCGTTTCAGCTCAAGATGCGACTGAAGGAACATCTCCGAACGCACACGGGCGAGAAGCCGTACAAGTGCGACAAGTGCGGCATGCGATGCACAACCAGCAACTCGCTGAGGCTTCACTCCAAGACTCACATCTCCGGCGCGATGTACACCTGCGAGGTGTGTCACAAATCGTACAGAAAGAAGCAGAACTGGATCGATCACTTGGAAAAACACTGGATGTACGACGAGAACGTCGCGCTGTCCCAGTGGTTCACGTGTCCTTTGTGCACGAAGACTTTGCCGACTTTCCGCATGGTGAAGCGCCACTTGGTGGACGACCATCAGATCGACCGCAAGGACCCGCTGGTGACTAACCAGCAGCCGTACTTCGAGTGCGGCGAGTGTACCGCGAAGTTCAAGCACCAAATGTCGCTCAAGGCGCATCGGGAGAAAACGCACGAGGGCAAGACCAGTCCGATATACGAGTGCGACTTGTGCAAACAGACTTTCAAGATCAAGCAACTGCTGATTAACCACATCAAGTACAAGCACGGGGGTAAGAAGCGTTACAAGTGCGCGCAGTGTGGCAAGAGATTCAACGACACCAAGTCGCTGTACAACCACATTCTGCTTCACATCGGTCGTAAGCCGTTCGCCTGCGATTACTGCGACAAAAAATTCCAACGAAAGGATTCCAGGGATATTCATCGCCGTAACGTGCACACGGGTGAACGGCCTTTCTGCTGCAGACTCTGTGACAAATCGTTCTTCAGTTACAACGATCGCGCGAGGCACCGCAAAATCGCTCACAAAGACGGTGAAAATTCGACGACGACGACTACGACGACGACGACAACGAAGAAAACGCCAGGAAAGGCTGAGATAAAAGTTCATAGTGCATCTCAAGAGGATCAGAGTGCACCTCGACAAGTATCGGAGCAAAAACCTTTGAACGAATCGCAAGAGATTGTGTGTGTGTACGTGTAG
- Protein Sequence
- MGISNDMLVCRLCDIKIEERQSKYIFDEADLAQKINVTLPIKVAQDDDNSKVICLKCYNKVISYYDFCQDILKSEKNSDESKINCLFKINKNKELTTSDILNLDKDLTFMCPNCNISLMILIDSKPNDSEHPFQISLAVVDQMKRLIRENVVPTSKPKTVRVISPQKLSAVNKLHSSSSNRDNCTEIFTKICKTYPIKDEDDNCEDACIPAMKKEKDASSLDQNLSLKPEVKRKRSCRDSDKKLVKEKQSKNNEESEIKYWSNSDDDWLHGVSSNNVKLTNDSAELPESQKKWTCQICSASYFQKLRYDFHMERHALNKMRDTVCIECDLKMVNELLLFDHYRRTHIFTQHTCVQCDEKYLTKIGLENHQKLKKHSGVVEYVIDPEETQLLNVLTCTLCGKSVQETEMNICNDVVTCLDCDTSISSMMVDGYEKRFIAQRQFHCAKCNTRFIRKDRLEFHMMRHNENKEDVVCSTCGKDFCTENSLFEHYMFVHKGARPFICELCGKSFQLKMRLKEHLRTHTGEKPYKCDKCGMRCTTSNSLRLHSKTHISGAMYTCEVCHKSYRKKQNWIDHLEKHWMYDENVALSQWFTCPLCTKTLPTFRMVKRHLVDDHQIDRKDPLVTNQQPYFECGECTAKFKHQMSLKAHREKTHEGKTSPIYECDLCKQTFKIKQLLINHIKYKHGGKKRYKCAQCGKRFNDTKSLYNHILLHIGRKPFACDYCDKKFQRKDSRDIHRRNVHTGERPFCCRLCDKSFFSYNDRARHRKIAHKDGENSTTTTTTTTTTKKTPGKAEIKVHSASQEDQSAPRQVSEQKPLNESQEIVCVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01271459; iTF_01268521; iTF_01267076; iTF_01270038; iTF_01267800;
- 90% Identity
- iTF_01271459; iTF_01267076; iTF_01268521; iTF_01270038; iTF_01267800;
- 80% Identity
- -