Pcoc005533.1
Basic Information
- Insect
- Pseudomyrmex concolor
- Gene Symbol
- -
- Assembly
- GCA_014839585.1
- Location
- QVOB01023132.1:9032-11880[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.12 14 6.8 0.5 1 23 348 372 348 372 0.92 2 13 2.9 3.2e+02 2.5 0.1 2 9 392 399 391 403 0.89 3 13 0.022 2.5 9.1 4.1 1 23 439 461 439 461 0.97 4 13 0.00081 0.092 13.6 1.3 2 23 469 491 468 491 0.93 5 13 6.1e-05 0.0069 17.2 1.0 1 23 497 519 497 519 0.98 6 13 0.00014 0.016 16.0 4.1 1 23 525 547 525 547 0.99 7 13 9.3e-05 0.011 16.6 2.7 1 23 553 575 553 575 0.98 8 13 0.45 51 5.0 0.3 1 21 588 608 588 611 0.90 9 13 4.5e-05 0.0051 17.6 3.0 1 23 627 650 627 650 0.96 10 13 0.00031 0.035 15.0 1.4 1 23 658 681 658 681 0.97 11 13 1.4e-05 0.0015 19.2 1.1 1 23 687 709 687 709 0.98 12 13 0.00079 0.09 13.7 1.5 1 23 715 738 715 738 0.95 13 13 0.022 2.5 9.1 3.9 1 23 744 767 744 767 0.96
Sequence Information
- Coding Sequence
- ATGGGCATATCAAATGATATGTTGGTGTGTCGTTTGTGTGATAAAAAAGTTGAGGAGAGACGATCAAAGTGTATCTTTGATGAAGCTGATTTGGCGCAGAAGATAAATGTCACATTGCCAATCAAGGTTGCGCAAGACGATGATAATTCCAAACTCATATGCTTGAAGTGTTATAACAAAGTTATCAGTTATTACGATTTTTGTCAGGACATTTTGAAGTCTGAGAAAAACAGCGATGAGTCAAAAATCAATTGCTTGTTTAAAATAAACAAAAATAAAGAATTAACAACGTCTGACATTTTGAACTTAGACAAAGATTTGACGTTTATGTGTCCAAATTGTAACATTTCTCTGATGATACTGATAGATAGCAAACCCAATGACAGCGAACATCCCTTTCAAGTTTCATTGGCTGTTGTCGATCAAATGAAAAGACTAATTAGAGAAAAAATTGTTCCGACAAGCAAACCCAAAACGGTAAGAGTTATCGGTCCAAAGAAATTGAGCGCAGTAAATAAATTGCATAGTTCGTCATCGAATCGCGATAATCATACTGAAATTTTCAATAAAATATGCAAAACCCATCCGATTAAAGAAGAAGACGACAATTGCAGAGACGCTTGCATTCCGCCGATGAAGAAAGAAGAAGATGCGTCGTCGTTGGATCAAAATTCATCATTAAAGTCTGGATCCAAGAGAAAAAGAAGTCGCGATTCGGACAAAAAACTCATTAAAGAAAAACAATCGAAGAGCAATGAAGAAAACGAAACCAAGTTTTGGTCGAACAGTGACGATGAGTGGTTGGGAGGAGTGTCAAATAACGTCAAGTTGACAAACGACAGCGCGGAATTGCCCGAATCTCAGAAGTGGACGTGTCAGATTTGCAGCGCCTCGTATTTCCAAAGACTCAGATACGATTTTCACATGGAAAGACATGCGTTAAACAAGATGCGCGACACCGTCTGTATAGAGTGCGACTTGAAAATGGTGAACGAGCTGTTGTTGTTCGATCATTACAGGCGCACGCACACCTTCACGCATTACATTTGCGTGCAGTGCGACGAGAAATATCTGACCAAGATCGGACTGGAGAATCACCAGAAAATGAAGAAGCACGCCGGCATCGCGGAATACGTGATCGATCCAGAAGAGGCACAACTAATTAGTGTCCTGACTTGTACACTCTGCGGAAAATCAGTGCAGGAAACCGAGATGAACATCTGCAACGACGTGGTGACGTGTCTCGACTGCGACACCTCGATCTCATCGATGATGGTAGACGGATACGAGAAGAGATTCATCGCGCAGCGCCAGTTTCACTGCGCGAAATGCAACACGCGCTTCATACGCAAAGATAGACTGGAGTTCCACATGATGCGTCACAACGAGAACAAGGAAGACGTCGTTTGCAGCACGTGCGGCAAGGACTTTTGCACGGAGAATTCTCTGTTCGAACACTACATGTTTGTGCACAAAGGCGCGAGACCGTTTATATGCGAGCTGTGCGGAAAATCGTTTCAGCTCAAGATGCGACTGAAGGAACACCTCCGAACGCACACGGGCGAGAAGCCGTACCAGTGCGACAAGTGCGGCATGCGATGCACAACCAGCAACTCGCTGAGGCTTCACTCCAAGACTCACATCTCCGGCGCGATGTACACCTGCGAGGTCTGTCACAAGTCGTACAGAAAGAAGCAGAACTGGATCGATCACTTGGAGAAACACTGGATGTACGACGAGAACGTCGCGCTGTCCCAGTGGTTCACGTGTCCTTTGTGCATGAAGACCCTGCCGACTTTCCGCATGGTTAAGCGCCACTTGGTGGACGACCATCAGATCGACCGCAAGGATCCATTGGTGACTAATCAGCAGCCGTACTTCGAGTGCAGCGAGTGTAACGAGAAGTTCAAGCACCAAATGTCGCTCAAGGCGCATCGGGAGAGAACGCACGAGGGCAGGACCAGTCCGATATACGAGTGCGACTTGTGCAAACAGACTTTCAAGATCAAGCAACTGCTGATTAACCACATCAAGTACAAGCACGGTGGTAAGAAGCGATACAAGTGCGCGCAGTGTGGCAAGAGATTCAACGACACCAAGTCGCTGTACAATCACATTTTGCTTCACATCGGCCGTAAGCCGTTCGCCTGCGATTACTGCGACAAGAAATTCCAACGAAAGGATTCCAGGGATATTCATCGTCGTAACGTGCACACGGGTGAACGGCCTTTCTGCTGCAGACTCTGTGACAAATCGTTCTTCAGTTACAACGATCGCGCGAGACATCGCAAAATCGCTCACAAAGACGATGAAAATTCGACGACGACGACGAAGAAAACGCCGGAAAAGGTTGAGATAAAAGTTGATAGTGCATCTCAAGAGGATCAGAGTGCACCTCGACAAGTATCGGAGCAAAAACCTTTGAACGAATTGCAAGAGATTGTGTGTGTGTACGTGTAA
- Protein Sequence
- MGISNDMLVCRLCDKKVEERRSKCIFDEADLAQKINVTLPIKVAQDDDNSKLICLKCYNKVISYYDFCQDILKSEKNSDESKINCLFKINKNKELTTSDILNLDKDLTFMCPNCNISLMILIDSKPNDSEHPFQVSLAVVDQMKRLIREKIVPTSKPKTVRVIGPKKLSAVNKLHSSSSNRDNHTEIFNKICKTHPIKEEDDNCRDACIPPMKKEEDASSLDQNSSLKSGSKRKRSRDSDKKLIKEKQSKSNEENETKFWSNSDDEWLGGVSNNVKLTNDSAELPESQKWTCQICSASYFQRLRYDFHMERHALNKMRDTVCIECDLKMVNELLLFDHYRRTHTFTHYICVQCDEKYLTKIGLENHQKMKKHAGIAEYVIDPEEAQLISVLTCTLCGKSVQETEMNICNDVVTCLDCDTSISSMMVDGYEKRFIAQRQFHCAKCNTRFIRKDRLEFHMMRHNENKEDVVCSTCGKDFCTENSLFEHYMFVHKGARPFICELCGKSFQLKMRLKEHLRTHTGEKPYQCDKCGMRCTTSNSLRLHSKTHISGAMYTCEVCHKSYRKKQNWIDHLEKHWMYDENVALSQWFTCPLCMKTLPTFRMVKRHLVDDHQIDRKDPLVTNQQPYFECSECNEKFKHQMSLKAHRERTHEGRTSPIYECDLCKQTFKIKQLLINHIKYKHGGKKRYKCAQCGKRFNDTKSLYNHILLHIGRKPFACDYCDKKFQRKDSRDIHRRNVHTGERPFCCRLCDKSFFSYNDRARHRKIAHKDDENSTTTTKKTPEKVEIKVDSASQEDQSAPRQVSEQKPLNELQEIVCVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269288;
- 90% Identity
- iTF_01269288;
- 80% Identity
- -