Pfla014120.1
Basic Information
- Insect
- Pseudomyrmex flavicornis
- Gene Symbol
- Znf131
- Assembly
- GCA_014825475.1
- Location
- QVNW01002175.1:5293-8013[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.3 32 5.6 0.7 1 23 347 371 347 371 0.90 2 13 3 3.2e+02 2.5 0.1 2 9 391 398 390 402 0.89 3 13 0.023 2.5 9.1 4.1 1 23 438 460 438 460 0.97 4 13 0.00086 0.092 13.6 1.3 2 23 468 490 467 490 0.93 5 13 6.5e-05 0.0069 17.2 1.0 1 23 496 518 496 518 0.98 6 13 0.00015 0.016 16.0 4.1 1 23 524 546 524 546 0.99 7 13 9.9e-05 0.01 16.6 2.7 1 23 552 574 552 574 0.98 8 13 0.48 51 5.0 0.3 1 21 587 607 587 610 0.90 9 13 0.00021 0.022 15.6 5.2 1 23 626 649 626 649 0.96 10 13 0.00032 0.035 15.0 1.4 1 23 657 680 657 680 0.97 11 13 1.4e-05 0.0015 19.2 1.1 1 23 686 708 686 708 0.98 12 13 0.00084 0.089 13.7 1.5 1 23 714 737 714 737 0.95 13 13 0.064 6.8 7.7 3.0 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGGGCATATCAAATGATATGTTGGTGTGTCGTTTGTGTGATAAAAAAGTTGAGGAAAGACGGTCAAAGTATATCTTTGATGAAGCTGATTTGGCGCAGAAAATAAATGTCACATTGCCAATCAAGGTTGCGCAAGACGATGATAATTCCAAACTCATATGCTTGCAGTGTTATAACAAAGTTATCAGTTATTACGATTTTTGTCAGGACATTTTGAAGTCTGAGAAAAACAGCGATGAGTCAAAAATCAATTGCTTGTTTAAAATAAACAAAAATAAAGAATTAACAACATCTGACATTTTGAACTTAGACAAAGACTTGACGTTTATGTGTCCGAATTGTAACATTTCTCTGATGATACTGATAGATAGCAAACCCAATGACAGCGAACATCCTTTTCAAGTTTCATTGGCTGTTGTCGATCAAATGAAAAGACTAATAAGAGAAAAGATAGTTCCGACAAGCAAACCGAAAACGGTAAGAGTTATCACTCCAAAGAAATTGAGCGCAGTAAATAAATTGCACAGTTCGTCATCGAATCGCGATAACTGTACTGAAATTTTTAATAAAATATGCAAAACCTATCCGATAAAAGACGAAGATTGCAAAGACGTTTGCATCCCGTCGACGGTGAAAGAAGAAGATGCGTCGTCGTTGGATCAAAATTCATCATTAAAGCCTGAAGCCAAGAGAAAAAGAAGTTGTCGCGATTCGGACAAGAAACTCGTTAAAGAGAAACAATCGAAGAACGATGAAGAAATCGAAGCCAAGTTTTGGTCGAACAGTGACGACGAGTGGTTGGACGGAGTGCCAAATAACGTCAAGTTGACTAACGACAACGTGGAATTGCCCGAATCTCAGAAGTGGACGTGTCAGATTTGCAGCGCCTCGTATTTCCAAAGACTCAGATACGATTTTCACATGGAAAGACATGCGTTAAACAAAATGCGCGACACCGTTTGTATAGAGTGCGACTTGAGAATGGTGAACGAGCTGTTGTTGTTCGATCACTTCAGGCGCGCGCACACCTTCACGCAACACATTTGTCTGCAGTGCGACGAGAAATATCTGACCAAGATCGGACTGGAAAATCACCAGAAAATGAAGAAGCACGCCGGCGTCGCGGAATACATGATCGATCCGGAACAGACGCAATTATTAAACGTCCTGACTTGTACACTCTGCGGAAAATCAGTGCAGGAAACCGAGATGAACATCTGCAACGACGTGGTGACGTGTCTCGACTGCGACACCTCGATCTCATCGATGATGGTCGACGGATACGAGAAGAGATTCATCGCGCAGCGTCAGTTTCACTGCGCGAAATGCAACACGCGCTTCATACGCAAAGATAGACTGGAATTTCACATGATGCGGCACAACGAGAACAAGGAAGACGTCGTTTGCAGCACGTGCGGCAAGGACTTTTGCACGGAGAACTCTCTGTTCGAACATTACATGTTCGTGCACAAAGGCGCGAGACCGTTTATATGCGAGCTGTGCGGCAAATCGTTTCAGCTCAAGATGCGACTGAAGGAACACCTCCGAACGCACACGGGCGAGAAGCCGTACCAGTGCGACAAGTGCGGCATGCGATGCACAACCAGCAACTCGCTCAGGCTTCACTCCAAGACTCACATCTCCGGCGCGATGTACACCTGCGAGGTGTGTCACAAGTCGTACAGAAAGAAGCAGAACTGGATCGATCACTTGGAGAAACACTGGATATACGACGAGAACGTCGCGCTGTCCCAGTGGTTCACGTGTCCTTTGTGCATGAAGACCCTGCCGACTTTCCGCATGGTGAAGCGCCACTTGGTGGACGACCATCAGATCGACCGCAAGGACCCGCTGGTGACTAATCAGCAGCCGTACTTCGAGTGCAGCGAGTGTCACGAGAAGTTCAAGCATCAAATGTCGCTCAAGGCGCATCGGGAGAAAACGCACGAGGGCAAGACCAGTCCGATATACGAGTGCGACTTGTGCAAACAGACTTTCAAGATCAAGCAACTGCTGATTAACCACATCAAGTACAAGCACGGTGGTAAGAAGCGATACAAGTGCGCGCAGTGTGGCAAGAGATTCAACGACACCAAGTCGCTGTACAACCACATTCTGCTTCACATCGGTCGTAAGCCGTTTGCCTGCGATTACTGCGACAAGAAATTCCAGCGAAAGGATTCCAGGGATATTCATCGCCGTAACGTGCACACGGGTGAACGGCCTTTCTGCTGCAGACTCTGTGACGAATCGTTCTTCAGTTACAACGATCGCGCGAGGCACCGCAAAATCGCTCACAAAGACGGTGAAAATTCGACGACGACGACGACGAAGAAGAAGAAAACGCCGGAAAAGGTTGAGATAAAAGTTGATAGTGCATCTCAAGAGGATCAGAGTGCACCTCGACAAGTATCGGAGCAAAAACCTTTGAACGAATCGCAAGAGATTGTGTGTGTGTACGTGTAG
- Protein Sequence
- MGISNDMLVCRLCDKKVEERRSKYIFDEADLAQKINVTLPIKVAQDDDNSKLICLQCYNKVISYYDFCQDILKSEKNSDESKINCLFKINKNKELTTSDILNLDKDLTFMCPNCNISLMILIDSKPNDSEHPFQVSLAVVDQMKRLIREKIVPTSKPKTVRVITPKKLSAVNKLHSSSSNRDNCTEIFNKICKTYPIKDEDCKDVCIPSTVKEEDASSLDQNSSLKPEAKRKRSCRDSDKKLVKEKQSKNDEEIEAKFWSNSDDEWLDGVPNNVKLTNDNVELPESQKWTCQICSASYFQRLRYDFHMERHALNKMRDTVCIECDLRMVNELLLFDHFRRAHTFTQHICLQCDEKYLTKIGLENHQKMKKHAGVAEYMIDPEQTQLLNVLTCTLCGKSVQETEMNICNDVVTCLDCDTSISSMMVDGYEKRFIAQRQFHCAKCNTRFIRKDRLEFHMMRHNENKEDVVCSTCGKDFCTENSLFEHYMFVHKGARPFICELCGKSFQLKMRLKEHLRTHTGEKPYQCDKCGMRCTTSNSLRLHSKTHISGAMYTCEVCHKSYRKKQNWIDHLEKHWIYDENVALSQWFTCPLCMKTLPTFRMVKRHLVDDHQIDRKDPLVTNQQPYFECSECHEKFKHQMSLKAHREKTHEGKTSPIYECDLCKQTFKIKQLLINHIKYKHGGKKRYKCAQCGKRFNDTKSLYNHILLHIGRKPFACDYCDKKFQRKDSRDIHRRNVHTGERPFCCRLCDESFFSYNDRARHRKIAHKDGENSTTTTTKKKKTPEKVEIKVDSASQEDQSAPRQVSEQKPLNESQEIVCVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269288;
- 90% Identity
- iTF_01269288;
- 80% Identity
- -