Ppal006359.1
Basic Information
- Insect
- Pseudomyrmex pallidus
- Gene Symbol
- -
- Assembly
- GCA_014825455.1
- Location
- QVNV01004527.1:4130-6839[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.51 50 4.9 1.5 1 23 349 373 349 373 0.90 2 13 3.9 3.8e+02 2.2 0.2 2 9 393 400 392 404 0.89 3 13 0.024 2.3 9.1 4.1 1 23 440 462 440 462 0.97 4 13 0.00087 0.085 13.6 1.3 2 23 470 492 469 492 0.93 5 13 6.6e-05 0.0064 17.2 1.0 1 23 498 520 498 520 0.98 6 13 0.00015 0.014 16.1 4.1 1 23 526 548 526 548 0.99 7 13 0.00012 0.012 16.3 2.8 1 23 554 576 554 576 0.98 8 13 0.48 47 5.0 0.3 1 21 589 609 589 612 0.90 9 13 5.8e-05 0.0056 17.3 2.3 1 23 628 651 628 651 0.96 10 13 0.00033 0.032 15.0 1.4 1 23 659 682 659 682 0.97 11 13 1.5e-05 0.0014 19.2 1.1 1 23 688 710 688 710 0.98 12 13 0.00085 0.083 13.7 1.5 1 23 716 739 716 739 0.95 13 13 0.0022 0.21 12.4 2.0 1 23 745 768 745 768 0.97
Sequence Information
- Coding Sequence
- ATGGGCATATCAAATGATATGTTGGTGTGTCGTTTGTGTGATAAAAAAGTTGAGGAAAGACGGTCAAAGTATATCTTTGATGAAGCTGATTTGGCGCAGAAAATAAATGTCACATTGCCAATCAAGGTTGCGCAAGACGATGATAATTCCAAACTCATATGCTTGAAGTGTTATAACAAAGTTATCGATTATTACGATTTTTGTCAGGACATTTTGAAGTCTAAGAAAAACAGCGATGAGTCAAAAATCAATTGCTTGTTTAAAATAAACAAAAATAAAGAATTAACAACATCTGACATTTTGAACTTAGACAAAGACTTGACGTTTATGTGTCCAAATTGTAACATTTCTCTGATGATACTGATAGATAGCAAACCCAATGACAGCGAACATCCCTTTCAAGTTTCATTGGCTGTTGTCGATCAAATGAAAAGACTAATAAGAGAAAAGAACGTTACGACAAGCAAACCCAAAACGGTAAGAGTTATCAGTCCAAAGAATTTGAGCGCAGTAAATAAATTGCATAGTTCGTCATCGAATCGCGATACATGTACTGAAATTTTTAATAAAATATGCAAAGCCTATCCGATAAAAGAAGAAAAAGATTGCAAAGACGTTTGCATCCCGTCGACGATGAAAGAAGAAGATGCGTCGTCGGTGGATCAAAATTCATCATTGAAGCTTGGAGCCAAGAGAAAAAGAAGTTGTCGCGATTCGGACAAGAAACTCGTTAAAGAAAAACAATCGAAGAACGATGAAGAAATGGAAACCAAGTTTTGGTCGAACAGTGACGACGAGTGGTTGGACGGAGTGTCAAATAACGCCAAGTTGACTAACAACAGCGCGGAATTGCCCGAATCTCAGAAGAAGTGGACGTGTCAGATTTGCAGCGCCTCATATTTCCAAAGACTCAGATACGATTTTCACATGGAAAGGCATGCGTTAAACAAAATGCGCGACACCGTCTGTATAGAGTGCGACTTGAAGATGGCAAACGAGCTGTTGCTGTTCGATCACTACAGGCGCGCACACACCTTCACGCAACACATTTGCCTGCAGTGCGACGAGAAATATCTGACCAAGATCGGACTGGAGAATCACCAGAAAATGAAGAAGCACACCGGCTTCGCGGAATACATGATCGATCCGGAACAGACACAACTATTAAATGTCCTGACTTGTACATTCTGCGGGAAATCAGTGCAGGAAACCGAGATGAACGTCAGCACCGACGTGGTGACGTGTATCGACTGCGGCACCTCAATCTCATCGATGATGGTCGACGGATACGAAAAGAGATTCATCGCGCAGCGCCAGTTTCACTGTGCGAAATGCAACACGCGCTTCATACGCAAAGATAGACTGGAATTTCACATGATGCGGCACAACGAGAACAAGGAAGACGTGGTTTGCAGCACGTGCGGCAAGGATTTTTGCACGGAGAACTCTCTGTTTGAACATTACATGTTCGTGCACAAAGGCGCGAGACCGTTTATATGCGAGCTGTGCGGCAAATCGTTTCAGCTCAAGATGCGACTGAAGGAACACCTTCGAACGCACACAGGCGAGAAGCCGTACCAGTGCGAAAAGTGCGGCATGCGATGCACAACCAGCAACTCGCTTAGGCTTCACTCCAAGACTCACATCTCCGGCGCGATGTACACCTGCGAGGTGTGTCACAAAACGTACAGAAAGAAGCAGAACTGGATCGATCACTTGGAGAAACACTGGATATACGACGAGAACGTCGCGCTGTCCCAGTGGTTCACGTGTCCTTTGTGCATGAAGACTCTGCCGACTTTCCGGATGGTGAAGCGCCACTTGGTGGACGACCATCAGATCGACCGCAAGGACCCGCTGGTGACTAATCAGCAGCCGTACTTCGAGTGCGGCGAGTGTAACGAGAAGTTCAAGCACCAAATGTCGCTCAAGGCGCATCGGGAGAGAACGCACGAGGGCAAGACCAGTCCGATATACGAGTGCGACTTGTGCAAACAGACTTTCAAGATCAAGCAACTGCTGATTAATCACATCAAGTACAAGCACGGGGGTAAGAAGCGATACAAGTGCGCGCAGTGTGGCAAGAGATTCAACGACACCAAGTCGCTGTACAATCACATTCTGCTTCACATCGGTCGTAAGCCGTTCGCCTGCGATTACTGCGACAAGAAATTCCAACGAAAGGATTCCAGGGATATTCATCGCCGTAACGTGCACACGGGTGAACGGCCTTTCCGCTGCAGACTCTGTGACAAATCGTTCTTCAGTTACAACGATCGCGCGAGGCACCGCAAAATCGCTCACAAAGACGGTGAAAATTCGACGACAACGAAGAAAACGCCGGAAAAGGTTGAGATAAAAGTTGATAGTGCATCTCAAGAGGATCAGAGTGCACCTCGACAAGTATCGGAGCAAAAACCTTTGAACGAATCGCAAGAGATTGTGTGTGTGTACGTGTAG
- Protein Sequence
- MGISNDMLVCRLCDKKVEERRSKYIFDEADLAQKINVTLPIKVAQDDDNSKLICLKCYNKVIDYYDFCQDILKSKKNSDESKINCLFKINKNKELTTSDILNLDKDLTFMCPNCNISLMILIDSKPNDSEHPFQVSLAVVDQMKRLIREKNVTTSKPKTVRVISPKNLSAVNKLHSSSSNRDTCTEIFNKICKAYPIKEEKDCKDVCIPSTMKEEDASSVDQNSSLKLGAKRKRSCRDSDKKLVKEKQSKNDEEMETKFWSNSDDEWLDGVSNNAKLTNNSAELPESQKKWTCQICSASYFQRLRYDFHMERHALNKMRDTVCIECDLKMANELLLFDHYRRAHTFTQHICLQCDEKYLTKIGLENHQKMKKHTGFAEYMIDPEQTQLLNVLTCTFCGKSVQETEMNVSTDVVTCIDCGTSISSMMVDGYEKRFIAQRQFHCAKCNTRFIRKDRLEFHMMRHNENKEDVVCSTCGKDFCTENSLFEHYMFVHKGARPFICELCGKSFQLKMRLKEHLRTHTGEKPYQCEKCGMRCTTSNSLRLHSKTHISGAMYTCEVCHKTYRKKQNWIDHLEKHWIYDENVALSQWFTCPLCMKTLPTFRMVKRHLVDDHQIDRKDPLVTNQQPYFECGECNEKFKHQMSLKAHRERTHEGKTSPIYECDLCKQTFKIKQLLINHIKYKHGGKKRYKCAQCGKRFNDTKSLYNHILLHIGRKPFACDYCDKKFQRKDSRDIHRRNVHTGERPFRCRLCDKSFFSYNDRARHRKIAHKDGENSTTTKKTPEKVEIKVDSASQEDQSAPRQVSEQKPLNESQEIVCVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269288;
- 90% Identity
- iTF_01269288;
- 80% Identity
- -