Pcub009476.1
Basic Information
- Insect
- Pseudomyrmex cubaensis
- Gene Symbol
- -
- Assembly
- GCA_014825685.1
- Location
- QVOA01012410.1:35736-38476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.48 52 5.0 1.6 1 22 350 371 350 374 0.90 2 13 3 3.3e+02 2.5 0.1 2 9 394 401 393 405 0.89 3 13 0.023 2.5 9.1 4.1 1 23 441 463 441 463 0.97 4 13 0.00086 0.094 13.6 1.3 2 23 471 493 470 493 0.93 5 13 6.5e-05 0.007 17.2 1.0 1 23 499 521 499 521 0.98 6 13 0.00019 0.021 15.7 4.6 1 23 527 549 527 549 0.99 7 13 9.9e-05 0.011 16.6 2.7 1 23 555 577 555 577 0.98 8 13 0.47 52 5.0 0.3 1 21 590 610 590 613 0.90 9 13 0.00036 0.039 14.8 2.8 1 23 629 652 629 652 0.96 10 13 0.00032 0.035 14.9 1.4 1 23 660 683 660 683 0.97 11 13 1.4e-05 0.0016 19.2 1.1 1 23 689 711 689 711 0.98 12 13 0.00084 0.091 13.6 1.5 1 23 717 740 717 740 0.95 13 13 0.024 2.6 9.1 3.9 1 23 746 769 746 769 0.96
Sequence Information
- Coding Sequence
- ATGGGCATATCAAATGATATGTTGGTGTGTCGTTTGTGTGATATAAAAATTGAGGAAAGACAGTCAAAGTATATCTTTGATGAAGCTGATTTGGCGCAGAAAATAAATGTCACATTGCCAATCAAGGTTGCGCAAGACGATGATAATTCCAAAGTCATATGCTTGAAATGTTATAGCAAAGTTATCAGTTATTACGATTTTTGTCAGGACATTTTGAAGTCTGAGAAAAACAGCGACGAGTCAAAAATCAATTGCTTGTTTAAAATAAACAAAAATAAAGAATTAACAACATCTGACATTTTGAACTTAGACAAAGACTTGACGTTTATGTGTCCAAATTGTAACATCTCTCTGATGATACTGATAGATAGCAAACCCAATGACAGCGAACATCCCTTTCAAATTTCATTGGCTGTTGTCGATCAAATGAAAAGATTAATAAGAGAAAACGTCGTTCCAACAAGCAAACCCAAAACGGTAAGAGTTATCAGTCCACAGAAATTGAGCGCAGTAAATAAATTGCATAGCTCGTCATCGAATCGCGATAACTGTACTGAAATTTTTACTAAAATATGCAAAACCTATACGATAAAAGACGAAGACGACAATTGCGAAGACGCTTGCATCCCGGCAATGAAAAAAGAAGATGCGTCGTCGTTGGATCAAAATTTATCATTAAAGCCTGAAGTCAAGAGAAAAAGAAGTTGTCGCGATTCGGACAAGAAACTCGTTAAAGAAAAACAATCGAAGAACAATGAAGAAAGCGAAGTCAAGTATTGGTCGAACAGTGACGACGATTGGTTGCACGGAGTGTCGTCAAATAACGTCAAGTTGACTAACGACAGCGCGGAATTGCCCGAATCTCAGAAGAAGTGGACGTGCCAGATTTGCAGCGCCTCCTATTTCCAAAAACTCAGATACGATTTTCACATGGAAAGGCATGCGTTAAACAAAATGCGCGACACCGTCTGTATAGAGTGCGACTTGAAAATGGTGAACGAGCTGTTGTTGTTCGATCACTATAGGCGTACACACATCTTCACGCAACACACTTGCGTGCAGTGCGACGAGAAATATTTGACCAAGATCGGACTGGAGAATCACCAGAAATTAAAGAAGCACACCGGCGTCGTGGAGTACGTGATCGATCCGGAAGAGACACAACTATTAAATGTCCTGACTTGCACACTCTGCGGAAAATCAGTGCAGGAAACCGAGATGAACATATGCAACGACGTGGTCACGTGTCTCGACTGTGACACCTCGATCTCATCGATGATGGTCGACGGATACGAGAAGAGATTCATTGCTCAACGCCAGTTTCACTGCGCGAAATGCAACACGCGGTTCATACGCAAAGATAGACTGGAGTTCCACATGATGCGTCACAACGAGAACAAAGAAGACGTCGTTTGCAGCACGTGCGGCAAGGACTTTTGCACGGAGAACTCTCTGTTCGAACACTACATGTTCGTGCACAAAGGCGCGAGACCGTTTATATGCGAGCTGTGCGGCAAATCGTTTCAGCTCAAGATGCGACTGAAGGAACATCTCCGAACGCACACGGGCGAGAAGCCGTACAAGTGCGACAAGTGCGGCATGCGATGCACAACCAGTAACTCGCTGAGGCTTCACTCCAAGACTCACATCTCCGGCGCGATGTACACCTGCGAGGTGTGTCACAAATCGTACAGAAAGAAGCAGAACTGGATCGATCACTTGGAGAAACACTGGATGTACGACGAGAACGTCGCGCTGTCCAAGTGGTTCACGTGTCCTTTGTGCATGAAGACTTTGCCGACTTTCCGCATGGTAAAGCGCCACTTGGTGGACGACCATCAGATCGACCGCAAGGACCCGCTGGTGAGTAACCAGCAGCCGTACTTCGAGTGCAGCGAGTGTAGCGCGAAGTTCAAGCACCAAATGTCGCTCAAGGCGCATCGGGAGAAAACGCACGAGGGCAAGACCAGTCCGATATACGAGTGCGACTTGTGCAAACAGACTTTCAAGATCAAGCAACTGCTGATTAACCACATCAAGTACAAGCACGGGGGTAAGAAGCGTTACAAGTGCGCGCAGTGTGGCAAGAGATTCAACGACACCAAGTCGCTGTACAACCACATTCTGCTTCACATCGGTCGTAAGCCGTTCGCCTGCGATTACTGCGACAAAAAATTCCAACGAAAGGATTCCAGGGATATTCATCGCCGTAACGTGCACACGGGTGAACGGCCTTTCTGCTGCAGACTCTGTGACAAATCGTTCTTCAGTTACAACGATCGCGCGAGGCACCGCAAAATCGCTCACAAAGACGGTGAAAATTCGACGACGACGACTACGACGACGACGACAACGAAGAAAACGCCAGGAAAGGCTGAGATAAAAGTTGATAGTGCATCTCAAGAGGATCAGAGTGCACCTCGACAAGTATCGGAGCAAAAACCTTTGAACGAATCGCAAGAGATTGTGTGTGTGTACGTGTAG
- Protein Sequence
- MGISNDMLVCRLCDIKIEERQSKYIFDEADLAQKINVTLPIKVAQDDDNSKVICLKCYSKVISYYDFCQDILKSEKNSDESKINCLFKINKNKELTTSDILNLDKDLTFMCPNCNISLMILIDSKPNDSEHPFQISLAVVDQMKRLIRENVVPTSKPKTVRVISPQKLSAVNKLHSSSSNRDNCTEIFTKICKTYTIKDEDDNCEDACIPAMKKEDASSLDQNLSLKPEVKRKRSCRDSDKKLVKEKQSKNNEESEVKYWSNSDDDWLHGVSSNNVKLTNDSAELPESQKKWTCQICSASYFQKLRYDFHMERHALNKMRDTVCIECDLKMVNELLLFDHYRRTHIFTQHTCVQCDEKYLTKIGLENHQKLKKHTGVVEYVIDPEETQLLNVLTCTLCGKSVQETEMNICNDVVTCLDCDTSISSMMVDGYEKRFIAQRQFHCAKCNTRFIRKDRLEFHMMRHNENKEDVVCSTCGKDFCTENSLFEHYMFVHKGARPFICELCGKSFQLKMRLKEHLRTHTGEKPYKCDKCGMRCTTSNSLRLHSKTHISGAMYTCEVCHKSYRKKQNWIDHLEKHWMYDENVALSKWFTCPLCMKTLPTFRMVKRHLVDDHQIDRKDPLVSNQQPYFECSECSAKFKHQMSLKAHREKTHEGKTSPIYECDLCKQTFKIKQLLINHIKYKHGGKKRYKCAQCGKRFNDTKSLYNHILLHIGRKPFACDYCDKKFQRKDSRDIHRRNVHTGERPFCCRLCDKSFFSYNDRARHRKIAHKDGENSTTTTTTTTTTKKTPGKAEIKVDSASQEDQSAPRQVSEQKPLNESQEIVCVYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01269288;
- 90% Identity
- iTF_01269288;
- 80% Identity
- -