Ppra021266.1
Basic Information
- Insect
- Pseudoips prasinana
- Gene Symbol
- -
- Assembly
- GCA_951640165.1
- Location
- OX621243.1:18099060-18100961[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-14 3.6e-12 47.8 0.0 1 44 17 60 17 60 0.95
Sequence Information
- Coding Sequence
- ATGCCAAATAAGTACCAGAGAAAAGCCATAGCCACTCGTGGTTGTTGGAGTGAAGATTCACTAAAGGCTGCTataaattccataaaaaatgGAGAATTGTCGGTGTATAGAGCAGCAATTATCTACGACATACCTCGTAAAACACTTGAACGAAGGTACAAGACTAACAATGACAAAAAGGGACCAATGGGACCTACCTCTATGCTAGGAGaccaaaatgaaaaaaaacttgCTGATCATATTAAAACGATGCAAGGAAAAGGATTCCCTTTGACAATTAGTGATGTAAGAGTGATTGCCTTTCAGTTTGCTGAGCAATTAAACATCaaacataaattcaataaatcagaGGAAAAGGCTGGCTATGATTGGCTGCAGATGTTTTTACGCAGACACCCAGATATTGTTTTGAGAAAGTCTGAAGGAGTTTCAATAGCCCGTTGTCAAGGTATGAACAGAGTCGAGGTCGGTGCTTACTTTGATTTGTTGGAAAAAATTCTCATAGACAATGATTTGATGACAAAGCCCAATTGTGTTTTCAATATGGATGAATCAGGCCTACGGCTGAACAATCGCCCAGGACATGTACTCGCAGCAAAGGGTACTAAAGCTGTATCCACGACAACGTCAACTGAAAAGGGTGAAACCATAACAGTCATAGCATGTTGCAATGCTGAAGGCACTTTTTTACCACCGGCGTGTATCATGAAGGGTAAGAATAAGAAAAGCGAATATGAAGATGGAATGCCTCCAGGATCTCGTATTTTTATGTCCGAAAAATCCGCTTATATCACATCAGCAATATTTTTTGAATGgctcaaaatacattttatgccTAGAAAGCCGCAGGGAAAAGTTTTACTATTGCTTGATGGTCACTCCACTCACTGCAATTCAGTAGAAATGCTTGAATATGCCAATGAAAATGAAATCATTCTTCTGTCTATGCCGAGTCACACATCTCATTTTTTACAGCCCCTTGATAGGGCAGTGTTTAAATCGCTGAAACATCACTTTTATGAACAATGTCGGCTATGGATAAATCAAAATCCAGGTCGCCGGATCACAAGACTCTCATTTGggtcattattaaataaagcatGGGGCAAGGCAGCTACAGCCGAAAACGCTATTTCTGGATTTAGAGCATGTGGAGTGTTCCCATTTAATCCAGCAGCAATACCTGATTATGCATTCATCAGCGACCATGGAGTGACTAATATTCATTCAAGTTTACCTGTTTCTACAAGTGTAACGTCCATCACTCCACCAAATTCCAGAGAAACAGGTGGAAATGAACCATTAGCAATACCAGGAACATCTGCTGATCAATGGACGCCTTCTCGTATTTTAAAAGACATATCCCCTATTCCTCAAAAAATAATGGAAGTTCGTAAACGTAGCAAACAGGTTGGCAAACTTTTGACTTCAGAGGAGCATATAGCATTAAGAAAGGACAAAGAGAACGAAAAGACTTTGAAAGAACAGAGGCGTAAAGTtaatcaagaaaaaaaaaagattaaaccCAAAGATAAGAAGACTGATACAAATAGAATTAGAAAACGGAAAGCTGTAAGGCGTATTAGCGAAAGCAGTTCTGATCTCAGTGAACCAGTATTGTGCGATACATCAGACGAAGAAGATAAAGAAAACGAAGCAGATAACTGTGCTGGATGCggagaaaattattataagacTCGTCTTGTGGAAGATTGGCTCCAGTGTCTTATGTGTGACAGATGGGTACATGAAAACTGTACCGAGTTTGATGATATGTGCTCCAAATGTGGacagaagaaaaaaaaagaagctAATCAAGCAGAATTTCAAGGCAAGGGAAAGGGAAAAGGGAAGTCGAGTACTGGTCAACTATCCCGTATAGCTACGGCCAACACACCCTGA
- Protein Sequence
- MPNKYQRKAIATRGCWSEDSLKAAINSIKNGELSVYRAAIIYDIPRKTLERRYKTNNDKKGPMGPTSMLGDQNEKKLADHIKTMQGKGFPLTISDVRVIAFQFAEQLNIKHKFNKSEEKAGYDWLQMFLRRHPDIVLRKSEGVSIARCQGMNRVEVGAYFDLLEKILIDNDLMTKPNCVFNMDESGLRLNNRPGHVLAAKGTKAVSTTTSTEKGETITVIACCNAEGTFLPPACIMKGKNKKSEYEDGMPPGSRIFMSEKSAYITSAIFFEWLKIHFMPRKPQGKVLLLLDGHSTHCNSVEMLEYANENEIILLSMPSHTSHFLQPLDRAVFKSLKHHFYEQCRLWINQNPGRRITRLSFGSLLNKAWGKAATAENAISGFRACGVFPFNPAAIPDYAFISDHGVTNIHSSLPVSTSVTSITPPNSRETGGNEPLAIPGTSADQWTPSRILKDISPIPQKIMEVRKRSKQVGKLLTSEEHIALRKDKENEKTLKEQRRKVNQEKKKIKPKDKKTDTNRIRKRKAVRRISESSSDLSEPVLCDTSDEEDKENEADNCAGCGENYYKTRLVEDWLQCLMCDRWVHENCTEFDDMCSKCGQKKKKEANQAEFQGKGKGKGKSSTGQLSRIATANTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406636;
- 90% Identity
- iTF_01264324; iTF_01264326; iTF_00667272; iTF_00667273; iTF_00667274; iTF_00667275; iTF_00407491; iTF_00951715; iTF_00407492; iTF_00407493; iTF_00407494; iTF_01361511; iTF_00406636; iTF_01118192;
- 80% Identity
- -