Sexi002366.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022050.1:10308749-10310659[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-16 1.4e-13 50.7 0.1 1 44 17 60 17 60 0.95
Sequence Information
- Coding Sequence
- ATGCCAAATAAGTATCAAAGAAAAGCCATAGCCACTCGTGGTTGTTGGAGTGAAGATTCACTAAAAGCTGCTataaattccataaaaaatggaGAAATGTCGGTGTATAGAGCAGCAGTTATCTATGGCATACCTCGTAAAACACTTGAAAGAAGGTACAAGACCAACAATGACAAAAAGGGACCAATGGGACCTACCTCTATGCTTGGAgaccaaaatgaaaaaaaactggCTGATCATATTAAAACGATGCAAGGAACAGGATTTCCTTTGACAATTAGAGATGTAAGAGTGATTGCCTTTCAGTTTGCTGAGCAATTAAACATCAAACATAAATTCAACAGATCAGAGGAAAAGGCTGGCTATGATTGGCTGCAGATGTTTTTACGCAGACACCCAGATATTGTTTTGAGAAAGTCTGAAGGAGTTTCAATAGCCCGTTGTCAAGGTATGAACAGAAACGAGGTCAGTGCTTACTTTgatttgttagaaaaaaatctCATTGATAATGACTTAATGACAAAGCCCAATTGTGTGTTTAATATGGATGAATCAGGTCTACAGCTAAACAATCGCCCTGGACATGTACTCGCAGCAAAGGGTACTAAAGCTGTATCCACGACAACGTCAACTGAAAAGGGTGAAACCATTGCAATCATAGCATGTTGCAATGCTGAAGGCACTTTTCTACCACCGGCGTGTATCATGAAGGGTATGAATAAGAAAAGCGAATATGAAGATGGAATGCCTCCAGGATCCCGTATTTTTATGTCCAAAAAATCCGCTTATATCACTTCAGCAATATTTTTGGAATGGctcaaaatacattttacgcCTAGAAAGCCGCCAGGAAAAGTTTTACTTTTGCTTGATGGTCACTCCACGCACTGCAATTCCGTAGAAATGCTTGAATATGCCAATGAAAATGAGATCATTCTTCTGTCCATGCCTAGCCACACATCTCATTTTTTACAGCCCCTTGATAGGGCAGTGTTTAAATCGCTGAAATGTCACTTTTATGACCAATGCCGGCTATGGATAAACCAAAATCCAGGTCGCCGAATCACAAGACTCTCATTTGGGTCATTATTGAATAAAGCGTGGGGCAAGGCAGCTACTGCCGAAAACGCCATTTCTGGATTTAGAGCATGTGGAGTGTTCCCATTTAATCCAACAGCAATACCTGATTATGCATTTATCAATGACCGACCCCCAGATGGAGTGACTAACATTCATTCAAGTTTACCTTTTTCTACAAGTGTAACGCCCATCACTCCACCAAATTTCAGAGAAACAGGTGAAAATGAACCATTAGCAATACCAGGAACATCTGCTGATCAATGGACGCCTTCTAGAATTTTAAAAGACATATCCCCTATTCCTCAAAAACTAATGGAAGTTCGTAAACGTAGCAAACAGGTTGGCAAACTTTTGACATCAGAGGAGCATATAGCATTAAGAAAGGATAAAGAAAACGAAAAAACATTGAAAGAGCAAAGGCGTAAagttaaacaagaaaaaaagatGGTTAAACCCAAAGATAAGAAGACTGATACCAATAAGAATAGAAAGCGGAAAGCTGTAAGGCGTATTAGCGAAAGCAGTTCTGATCTCAGTGAACCAGTATTGTGTGATACATCTGACGAAGAAGATAAAGAAAACGAAGCAGATAACTGCGCTGGATGcggagaaaattattataagacTCGTCTTGTGGAAGACTGGCTCCAGTGTCTTATTTGTGACAGGTGGGTACATGAAAACTGTACCGAGTTTGATGATATGTGCTCCAAATGTGGacagaagaagaaaaaagaagCTAAACAAGCCGAATTTCAGGGCAAGGGAAAGGGAAAAGGAAAGTCAAGTACTGGTCATCTATCCCGTATACCTACGGCTAACTCACCCTGA
- Protein Sequence
- MPNKYQRKAIATRGCWSEDSLKAAINSIKNGEMSVYRAAVIYGIPRKTLERRYKTNNDKKGPMGPTSMLGDQNEKKLADHIKTMQGTGFPLTIRDVRVIAFQFAEQLNIKHKFNRSEEKAGYDWLQMFLRRHPDIVLRKSEGVSIARCQGMNRNEVSAYFDLLEKNLIDNDLMTKPNCVFNMDESGLQLNNRPGHVLAAKGTKAVSTTTSTEKGETIAIIACCNAEGTFLPPACIMKGMNKKSEYEDGMPPGSRIFMSKKSAYITSAIFLEWLKIHFTPRKPPGKVLLLLDGHSTHCNSVEMLEYANENEIILLSMPSHTSHFLQPLDRAVFKSLKCHFYDQCRLWINQNPGRRITRLSFGSLLNKAWGKAATAENAISGFRACGVFPFNPTAIPDYAFINDRPPDGVTNIHSSLPFSTSVTPITPPNFRETGENEPLAIPGTSADQWTPSRILKDISPIPQKLMEVRKRSKQVGKLLTSEEHIALRKDKENEKTLKEQRRKVKQEKKMVKPKDKKTDTNKNRKRKAVRRISESSSDLSEPVLCDTSDEEDKENEADNCAGCGENYYKTRLVEDWLQCLICDRWVHENCTEFDDMCSKCGQKKKKEAKQAEFQGKGKGKGKSSTGHLSRIPTANSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406636;
- 90% Identity
- iTF_01264325;
- 80% Identity
- -