Ogra012940.1
Basic Information
- Insect
- Orthosia gracilis
- Gene Symbol
- -
- Assembly
- GCA_947562075.1
- Location
- OX387274.1:17675085-17676995[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-16 2.1e-13 50.5 0.1 1 44 17 60 17 60 0.95
Sequence Information
- Coding Sequence
- atgccaaataagtatcagagaaaagccatagccactcgtggttgttggagtgaagattcactaaaaGCTGCTATAAATTCCATAAAAAATGGAGCAATGTCGGTGTATAGAGCAGCAGTTATCTACGGCATACCTCGTAAAACACTTGAAAGAAGGTACAAGACTAACAATGACAAAAAGGGACCAATGGGACCTACCTCTATGCTTGGAGACCAAAATGAAAAAAAACTGGCTGATCATATTAAAACGATGCAAGGAACAGGATTCCCTTTGACAATAAGTGATGTAAGAGTGATTGCCTTTCAGTTTGCTGAGCAATTAAACATCAAACATAAATTCAATAAATCAGAGGAAAAGGCTGGCTATGATTGGCTGCAGATGTTTTTACGCAGACACCCAGATATTATTTTGAGAAAGTCTGAAGGAGTTTCAATAGCCCGTTGTCAAGGTATGAACAGAAACGAGGTCAGTGCTTACTTTGATTTGTTAGAAAAAAATCTCATAGATAATGACTTGATGACAAAGCCCAATTGTGTGTTCAATATGGATGAATCAGGTCTACAGCTAAACAATCGCCCTGGACATGTACTCGCAGCAAAGGGTACTAAAGCTGTATCCACGACAACGTCAACTGAAAAGGGTGAAACCATTACAATCATAGCATGTTGCAATGCTGAAGGCACTTTTCTACCACCGGCGTGTATCATGAAGGGTATGAATAAGAAAAGCGAATATGAAGATGGAATGCCTCCAGGATCCCATATTTTTATGTCCAAAAAATCCGCTTATATCACATCAGCAATATTTTTGGAATGGCTCAAAATACATTTTATGCCTAGAAAGCCGCCAGGAAAAGTTTTACTTTTGCTTGATGGTCACTCCACGCACTGCAATTCAGTAGAAATGCTTGAATATGCCAATGAAAATGAGATCATTCTTCTGTCTATGCCGAGCCACACATCTCATTTTTTACAGCCCCTTGATAGGGCAGTGTTTAAATCGCTGAAATGTCACTTTTATGAACAATGCCGGCTATGGATAAAACAAAATCCAGGTCGCCGAATCACAAGACTCTCATTTGGGTCATTATTGAATAAAGCATGGGGCAAGGCAGCTACAGCCGAAAACGCCATTTCTGGATTTAGAGCATGTGGAGTGTTCCCATTTAATCCAACAGCAATACCTGATTATGCATTTATCAGTGACCGACCACCAGATGGAGTGACTAACATTCATTCAAGTTTACCTGTTTCTACAAGTGTAACGTCCATCACTCCACCAAATTTCAGAGAAACAGGTGAAAATGAACCATTAGCAATACCAGGAACATCTGCTGATCAATGGACGCCTTCTCGGATTTTAAAAGACATATCCCCTATTCCTCAAAAAATAATGGAAGTTCGTAAACGTAGCAAACAGGTTGGCAAacttttgacttcagaggagcatatagcattaagaaaggacaaagaaaacgaaaagactttgaaagaacataggcgtaaagttaaacaagaaaaaaaaatggttaaacccaaagataagaagactgatacaaataagaatagaaaacggaaagctgtaaggcgtattagcgaaagcagttctgatctcagtgaaccagtattgtgtgatacatctgacgaagaagataaagaaaacgaagcagataactgcgctggatgcggagaaaattattataagactcgtcttgtggaagagtggctccagtgtcttatttgtgacaggtgggtacatgaaaactgtaccgagtttgatgatatgtgctccaaatgtggacagaagaagaaaaaagaagctaaacaagccgaatttcagggcaagggaaagggaaaagggaagtcaagtactggtcatctatcccgtatagctacggccaactcaccctga
- Protein Sequence
- MPNKYQRKAIATRGCWSEDSLKAAINSIKNGAMSVYRAAVIYGIPRKTLERRYKTNNDKKGPMGPTSMLGDQNEKKLADHIKTMQGTGFPLTISDVRVIAFQFAEQLNIKHKFNKSEEKAGYDWLQMFLRRHPDIILRKSEGVSIARCQGMNRNEVSAYFDLLEKNLIDNDLMTKPNCVFNMDESGLQLNNRPGHVLAAKGTKAVSTTTSTEKGETITIIACCNAEGTFLPPACIMKGMNKKSEYEDGMPPGSHIFMSKKSAYITSAIFLEWLKIHFMPRKPPGKVLLLLDGHSTHCNSVEMLEYANENEIILLSMPSHTSHFLQPLDRAVFKSLKCHFYEQCRLWIKQNPGRRITRLSFGSLLNKAWGKAATAENAISGFRACGVFPFNPTAIPDYAFISDRPPDGVTNIHSSLPVSTSVTSITPPNFRETGENEPLAIPGTSADQWTPSRILKDISPIPQKIMEVRKRSKQVGKLLTSEEHIALRKDKENEKTLKEHRRKVKQEKKMVKPKDKKTDTNKNRKRKAVRRISESSSDLSEPVLCDTSDEEDKENEADNCAGCGENYYKTRLVEEWLQCLICDRWVHENCTEFDDMCSKCGQKKKKEAKQAEFQGKGKGKGKSSTGHLSRIATANSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00406636;
- 90% Identity
- iTF_01264325;
- 80% Identity
- -