Pter142454.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987336.1:61607708-61613507[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-08 8.9e-07 31.5 0.0 1 39 238 277 238 281 0.90 2 4 2.3e-11 1.8e-09 40.2 0.1 1 39 292 330 292 333 0.95 3 4 8.1e-17 6.3e-15 57.6 0.0 1 45 347 392 347 392 0.98 4 4 1.1e-14 8.6e-13 50.8 0.0 1 39 399 438 399 442 0.94
Sequence Information
- Coding Sequence
- ATGTGTTCGAATTGTTTTAGACGCTTAGAAAACTATCAGGTAGTAACTAAGGAAACGCTAGGAAGCGATTTAACTAGGGAAATAAGAGAATCGCAAGAAAAATCCGAAGGCCAGTCGGATACTGAAGATGACATGCCTATAGcTCTTGATGAACATAAAAAACGACTCCAAAAGCTGCAACACGGACTCGAACCTGAACAGGATACCCCTCTCAACATGAGCAGCCATGGACTCATGGCTGGGCcgGcaatattttcaacatttgacACCGATGATTTTCCGCCGGAACCCCCAGCCCCCTCGGCTATTCCCGTGGGTCACATGGACATGTCCGATCACACAGCTACAATGCTGACAAACGTACCCATTCATCGGACAGATCTGTCGGATGCCACGACCAAATATGCAATGGAAATCAAAAAGGAGACCGAGgtaaaattcgaaacacTCCGTTCCTTCGACCAAGACAGCCTTCTAGAAATGGATTCGCATCTAAGTGGAGATCACTCTATAAGCTCACACGAAGATCTTGGGGACCTCCATCAGAACATGATGGGATCCGACTATACTCCCCCTTTACAGACCGGTATACATAATAGATTAGACATGAACGATAGTGATAATGGAGACCTTAGCGGTAAAACTAACGGACATTCTGGAGACGGACAACAGAGCGGGCGCGGTCACAGCGGCGGGGGACCCAAAACTTGGACGCAGGACGATATGGACATGGCGCTGGACGCACTGAAAAACCATAATATGAGTCTTACCAAGGCGTCGGCCAGCTATGGCATTCCCTCCACAACGCTCTGGCAAAGAGCGCACAGGTTGGGAATTGACACGCCGAAGAAGGAGGGCCCTACGAAGTCCTGGACGGAGGAGAACCTTAATAACGCTTTGGAGGCCTTAAGGACAGGGACTATATCTGCCAATAAGGCCAGTAAAGCTTATGGGATTCCCAGCAGCACCCTGTACAAAATAGCGAGACGAGAAGGAATAAGACTGGCCGCGCCCTTCAACGCAGCACCAACCACGTGGACACCAGAAGATTTAGAGAAGGCCTTAGAATCAATTCGAACAGGCCAAACGTCCGTCCAAAAGGCGTCCACAGAGTTCGGCATTCCAACTGGTACGCTCTATGGAAGGTGCAAAAGGGAGGGGATTGAGCTGTCACGTTCAAACCCGACTCCCTGGTCGGAGGACGCTATGGGAGAGGCGTTAGAAGCAGTCAGATTAGGTCACATGTCCATTAACCAAGCCGCCATCCATTACAACCTGCCCTACTCTTCTCTGTACGGGCGATTTAAAAGGGGGATTAAATACGATTCAGATAATATAGAGATACAGCAGGAAAACGCTCAACCTCCGCAAATGGACGTCCATTCATTCGGAGGCATAGAATTCAGTAACGGTCAACAAATTCAATATCAAAACCAACCAAACAGCTGA
- Protein Sequence
- MCSNCFRRLENYQVVTKETLGSDLTREIRESQEKSEGQSDTEDDMPIALDEHKKRLQKLQHGLEPEQDTPLNMSSHGLMAGPAIFSTFDTDDFPPEPPAPSAIPVGHMDMSDHTATMLTNVPIHRTDLSDATTKYAMEIKKETEVKFETLRSFDQDSLLEMDSHLSGDHSISSHEDLGDLHQNMMGSDYTPPLQTGIHNRLDMNDSDNGDLSGKTNGHSGDGQQSGRGHSGGGPKTWTQDDMDMALDALKNHNMSLTKASASYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEIQQENAQPPQMDVHSFGGIEFSNGQQIQYQNQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186924;
- 90% Identity
- iTF_01240018; iTF_01238471; iTF_00195870; iTF_00443866;
- 80% Identity
- -