Ppla053339.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020193.1:11686240-11695452[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-08 2.4e-06 29.6 0.0 1 39 353 392 353 396 0.90 2 4 1.3e-11 1.5e-09 39.8 0.1 1 39 407 445 407 448 0.95 3 4 4.6e-17 5.3e-15 57.3 0.0 1 45 462 507 462 507 0.98 4 4 6.2e-15 7.2e-13 50.4 0.0 1 39 514 553 514 557 0.94
Sequence Information
- Coding Sequence
- ATGCCCCGTGGGGCTGGGATAATAAAGACCGCGTCACATGTGATAGATAAGTGTAAGAAGTGGAGAAGGGTAATATTGGAAATGGGGGAGGTGCACCGGAGGTCCCTACTCCGCACTGCCGACCAACTGAAAATCAAAGGCCTGTGTGAATCCCCGAAAAACAGCACAGTAACGACTACCTCAATAACTAACAAATCACCTCAATTTTGTAGAAAAATCGACACTAATCTCAAAAGGACCTCATCTCCCAGTTTCACGTTACAAGACAATAATCATCGGCAGTACAAATACAGACGCTTAGACCATCATCAGATAGCAACTAAAGGATCAACAGAAAATAATCCAAGTAGAGGAGTAAGAGGAAAATCACAAAAACAATCCGAACATCAGTCTGATACTGAAAATGACATGCCTATAGGCCGGAAACTTTGCATCCCATCCTCCTCGTGTGTAGTTACTTATAATAGTTTTCTTGACATTCCAGCTCTTGATGAACACAAAAAACGCTACCAAAAGCTGCAACACGGACTTGAGCCTGAACAGGATATTCCTCTCAACATGAGCAGCCATGGACTCATGGCAGGACAGGCAATTTTTTCACCATTTGACACCGATGACTTTCCCCCAGAACCGCCTGCTCCGTCGGCCATTCCCGTGGGACACGTGGACATGTCCGATCATACGGCCACGATGTTGGCGAACACGCCCATTCATAGGACGGATCTGTCAGATGCCACAACTAAATATGCAATGGAAATCAAAAAGGAAACGGAGaTAAAATTTGAAACCCTACGTTCGTTCGACCAAGACAGCCTTTTAGAAATGGATTCGCACTTGAGTGGGGATCACTCTATCAGTTCTCACGAGGATCTTGGTGATATTCATCAAAATATGATGGGTTCAGAGTACACACCTCCTTTACAAACGGGCATGCATAACAGAATAGATATGAATGATAGCAGCTACAACAATGTAGATATATCCAATGCGAAAACGAATGGACATTGTGGAGAACAAAGTGGGCGAGGACACAGCGGAGGGGGACCGAAGACGTGGACGCAAGAGGATATGGATATGGCGTTGGATGCCCTGAAAAATCATAATATGAGTCTTACAAAGGCGTCAGCGAGCTTTGGTATTCCTTCCACAACTCTATGGCAAAGAGCACACAGGTTAGGCATTGACACTCCGAAAAAAGAGGGTCCTACCAAATCGTGGACAGAGGAAAACCTTAATAATGCTTTGGAGGCCTTAAGGACGGGGACTATATCTGCCAATAAGGCTAGTAAGGCCTATGGTATTCCCAGTAGCACCCTGTACAAAATAGCGAGACGAGAAGGAATAAGACTGGCCGCGCCCTTTAACGCAGCACCAACCACATGGACACCCGAAGACTTAGAGAAGGCCTTAGAATCTATTAGAACAGGGCAAACATCCGTCCAAAAAGCTTCCACAGAATTCGGCATTCCAACGGGCACCCTCTATGGAAGGTGCAAGAGAGAGGGGATAGAGCTGTCACGTTCAAATCCCACGCCCTGGTCGGAGGATGCTATGGGCGAGGCGTTAGAGGCAGTCAGattaGGTCACATGTCCATTAACCAAGCCGCCATCCACTACAACTTGCCTTACTCATCTCTATATGGGAGGTTTAAGAGAGGAATCAAATATGATTCAGATAATATAGAGATACAGCAAGAAAACGCTCAACCACAACAAATGGACGTCCATTCGTTCGGAGGTATAGAGTTCAGTAATGGACAACAAATTCAATATCAAAATCAGCCGAACAGCTGA
- Protein Sequence
- MPRGAGIIKTASHVIDKCKKWRRVILEMGEVHRRSLLRTADQLKIKGLCESPKNSTVTTTSITNKSPQFCRKIDTNLKRTSSPSFTLQDNNHRQYKYRRLDHHQIATKGSTENNPSRGVRGKSQKQSEHQSDTENDMPIGRKLCIPSSSCVVTYNSFLDIPALDEHKKRYQKLQHGLEPEQDIPLNMSSHGLMAGQAIFSPFDTDDFPPEPPAPSAIPVGHVDMSDHTATMLANTPIHRTDLSDATTKYAMEIKKETEIKFETLRSFDQDSLLEMDSHLSGDHSISSHEDLGDIHQNMMGSEYTPPLQTGMHNRIDMNDSSYNNVDISNAKTNGHCGEQSGRGHSGGGPKTWTQEDMDMALDALKNHNMSLTKASASFGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEIQQENAQPQQMDVHSFGGIEFSNGQQIQYQNQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01241730; iTF_01240018; iTF_01238471; iTF_00195870; iTF_00443866;
- 90% Identity
- -
- 80% Identity
- -