Pcer003618.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000065.1:716288-739359[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-09 3.6e-07 31.1 0.0 1 39 308 347 308 351 0.90 2 4 7.2e-12 6.2e-10 39.9 0.1 1 39 362 400 362 403 0.95 3 4 2.5e-17 2.2e-15 57.4 0.0 1 45 417 462 417 462 0.98 4 4 3.4e-15 3e-13 50.6 0.0 1 39 469 508 469 512 0.94
Sequence Information
- Coding Sequence
- ATGAACCCTCGCCGATCAAGGTTGTTTCAGTCACTACTCCGCACTGCCGACCAACTGAAAATCAAAGGCCTCTGTGAATCCCCAAAGGACGGCACCGTAACGACTACCTCAATCACTCACAAATCACCTCAATTTTGTAGAAAAACCGAAGCAACCCTCAAAAGAACCTCAACTCCCAGTTTTACGTTGCTTGACAATAACCATCGGCAGTACAAATACAGACGCTTAGAAAACCATCAGATAATACTCAACAAATCAGCTTCACCAGAAAGTGGTTTAAACAGAGAAGCAGAAGCAACATCGCAGAAGAAATCTGAAAGTCAGTCCGATACTGACAATGACATGCCTATAGCTCTTAATGAACACAAGAAACGACAAAAGCTACATCACGGACTCGAACCTGAACAAGACATTCCACTCAACATGAGTAGCCATGGACTCATGGCAGGGCAGGCAATTTTCTCCACATTCGACACCGATGACTTCCCTCCGGAACCCGCCGCCCCCTCGGCTATCCCCGTGGGTCATATGGACATGTCTGATCATACGGCGACGATGCTGACAAACACTCCCATACACCGGACAGACTTATCGGACGCCACGACAAAATACGCAATGGAAATCAAAAAAGAGACGGAAgtaaaattcgAAACGCTTCGTTCGTTCGACCAAGACAGCCTTCTAGAAATGGACTCACACCTTAGCGGGGATCACTCTATAAGTTCCCATGAAGACCTTGGTGATCTTCATCAGAACATGATGGGATCAGATTACACACCCCCTTTACAAAGTGGCATTCACAATAGATTAGACATGAGTGACGGTAGCGACAACGGAGATATATCCAGTGGAAAGACGAACGGGCATTCTGGAGATGGACAAAGCGGACGGGGTCATAGCGGAGGGGGACCCAAGACATGGACGCAAGAGGATATGGATATGGCGCTTGATGCACTGAAAAATCACAATATGAGTCTTACAAAGGCGTCAGCGAGCTACGGCATACCTTCCACTACCCTCTGGCAGAGGGCGCATAGGTTAGGCATAGACACTCCGAAAAAGGAGGGACCTACAAAATCGTGGACGGAGGAGAACCTTAATAATGCTTTGGAGGCCTTAAGGACGGGTACTATATCTGCCAATAAGGCTAGTAAAGCATATGGCATTCCCAGtagcaccctgtacaaaataGCGAGACGAGAAGGAATAAGACTGGCCGCGCCGTTTAACGCAGCACCAACCACGTGGACACCGGAAGATTTAGAAAAGGCCTTAGAATCTATTCGAACagGTCAGACGTCCGTCCAAAAAGCATCCACAGAATTCGGCATTCCAACAGGCACCCTCTATGGAAGGTGCAAGCGAGAGGGAATTGAGCTGTCGCGGTCCAATCCCACGCCTTGGTCGGAGGACGCTATGGGAGAGGCATTAGAGGCAGTCAGGTTAGGTCACATGTCCATTAATCAAGCAGCCATCCACTACAACTTGCCTTACTCTTCTCTGTATGGCCGATTCAAGAGAGGAATCAAATATGACTCTGATAATATAGAGatACAGCAAGAAAATACTCAGCCACAGCAAATGGACGTTCATCCGTTTGGTGGCATAGAATTCAGCAACGGTCAGCAAATTCAATACCAAAATCAACCAAACAGCTGA
- Protein Sequence
- MNPRRSRLFQSLLRTADQLKIKGLCESPKDGTVTTTSITHKSPQFCRKTEATLKRTSTPSFTLLDNNHRQYKYRRLENHQIILNKSASPESGLNREAEATSQKKSESQSDTDNDMPIALNEHKKRQKLHHGLEPEQDIPLNMSSHGLMAGQAIFSTFDTDDFPPEPAAPSAIPVGHMDMSDHTATMLTNTPIHRTDLSDATTKYAMEIKKETEVKFETLRSFDQDSLLEMDSHLSGDHSISSHEDLGDLHQNMMGSDYTPPLQSGIHNRLDMSDGSDNGDISSGKTNGHSGDGQSGRGHSGGGPKTWTQEDMDMALDALKNHNMSLTKASASYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEIQQENTQPQQMDVHPFGGIEFSNGQQIQYQNQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186924;
- 90% Identity
- iTF_01241730;
- 80% Identity
- -