Dabb053522.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000330.1:6429496-6446503[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-09 4.2e-07 31.2 0.0 1 39 264 303 264 307 0.90 2 4 2.9e-12 7.3e-10 40.1 0.1 1 39 318 356 318 359 0.95 3 4 1e-17 2.5e-15 57.5 0.0 1 45 373 418 373 418 0.98 4 4 1.4e-15 3.5e-13 50.7 0.0 1 39 425 464 425 468 0.94
Sequence Information
- Coding Sequence
- ATGCGCCCGGAGGGTTGGAGCAAGTTATTAGATAGAATAAGAGTAGGAAAAGggcaaattagaattttttttatgttgagaAGacGCTTAGAAAATCAACAAGTAGCAACTAAAGAATCAACCTTACCAGAAAGTAGTTTATCAAGGAAAGTGAGAGAAGAATCACAGGAAAAATCCGAACATCGGTCCGATACTGAAAATGACATGCCTATAGCTCTTGATGAACACAAAAAACGACTCCAAAAGCTGCAACACGGTCTCGAACCTGAACAGGATACTCCCCTCAACATGAGTAGCCATGGACTCATGGCAGGACAGgcaattttttcaacatttgacACCGATGACTTTCCTCCGGAACCCGCCGCCCCCTCGGCTATACCCGTGGGACACTTGGATATGTCCGAACATACAGCAACCATGCTGACGAATACGCCCATCCACAGGACGGATTTGTCAGATGCTACGTCTAAAtattctatggaaattaaaaaagaaacagaGATTAAATTTGAAACACTCCGCTCGTTCGACCAAGATAGCCTTCTAGAAATGGATTCCCATCTTAGTGGGGATCACTCTATAGGTTCACACGAAGACCTTGGTGATCTTCATCAAAATATGATGAGTGCAGAGTATACACCTCCTCTTCAAACAGGCATACCTAATAGAATAGatatgaaTGACAGCAGCGACAATGCCGATATATCCAGTGCGAAAACCAACGGACATTCCGGTGATATGTCGCAGAGTGGACGTGGACATAGCGGAGGAGGTCCCAAAACGTGGACACAAGAAGACATGGATATGGCGCTGGATGCCCTGAAAAATCATAATATGAGTCTTACCAAAGCATCGGCAAGTTATGGTATTCCCTCCACGACTCTTTGGCAAAGAGCTCATAGGTTAGGTATCGATACGCCGAAGAAAGAAGGTCCCACGAAATCGTGGACGGAGGAGAACCTTAATAATGCTTTGGAGGCCTTAAGGACGGGAACTATATCCGCCAATAAGGCCAGTAAAGCCTATGGCATTCCAAGCAGCACCCTGTACAAAATAGCGAGACGAGAAGGAATAAGACTGGCCGCGCCCTTTAACGCAGCACCAACCACGTGGACACCCGAAGATTTAGAAAAGGCCTTAGAATCTATACGAACagGTCAAACATCCGTCCAAAAAGCCTCCACAGAATTCGGCATTCCGACGGGCACGCTATATGGCAGGTGTAAAAGAGAGGGCATCGAACTGTCACGGTCCAACCCCACGCCCTGGTCCGAGGACGCGATGGGAGAGGCATTAGAGGCAGTCAGattaggTCATATGTCCATTAACCAAGCCGCCATCCACTATAACTTGCCTTACTCATCTCTATATGGACGATTTAAAAGAGGAATTAAATATGATTCAGATAATATAGAGATACAGCAAGAAAATGCTCAACCCCAACAAATGGACGTTCATTCATTTGGAGGTATAGAATTCAGTAATGGGCAGCAAATCCAATATCAAAATCAACCAAACAGCTGA
- Protein Sequence
- MRPEGWSKLLDRIRVGKGQIRIFFMLRRRLENQQVATKESTLPESSLSRKVREESQEKSEHRSDTENDMPIALDEHKKRLQKLQHGLEPEQDTPLNMSSHGLMAGQAIFSTFDTDDFPPEPAAPSAIPVGHLDMSEHTATMLTNTPIHRTDLSDATSKYSMEIKKETEIKFETLRSFDQDSLLEMDSHLSGDHSIGSHEDLGDLHQNMMSAEYTPPLQTGIPNRIDMNDSSDNADISSAKTNGHSGDMSQSGRGHSGGGPKTWTQEDMDMALDALKNHNMSLTKASASYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEIQQENAQPQQMDVHSFGGIEFSNGQQIQYQNQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01186924;
- 90% Identity
- iTF_01241730;
- 80% Identity
- -