Basic Information

Insect: Poecilus cupreus
Gene Symbol: prdm10
Assembly: GCA_963942605.1
Location: OZ012718.1:1887701-1894522[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.2e-05 0.0042 19.0 0.2 2 23 578 599 577 599 0.96

2 13 0.011 2.2 10.5 2.9 3 23 624 644 623 644 0.97

3 13 0.00073 0.14 14.2 0.0 2 23 675 696 674 696 0.96

4 13 0.0011 0.2 13.7 0.1 2 23 728 749 727 749 0.94

5 13 2.4e-05 0.0046 18.9 1.3 1 23 769 791 769 791 0.98

6 13 0.34 65 5.8 3.7 2 23 800 821 799 821 0.97

7 13 0.011 2.1 10.5 1.2 1 21 828 848 828 850 0.94

8 13 0.0026 0.5 12.5 2.1 1 23 856 879 856 879 0.95

9 13 5.1e-05 0.0098 17.9 0.3 3 23 886 906 885 906 0.99

10 13 1.6e-06 0.00031 22.6 2.4 1 23 912 935 912 935 0.95

11 13 0.0081 1.5 10.9 1.9 1 23 981 1004 981 1004 0.97

12 13 0.0003 0.057 15.5 2.2 1 23 1026 1049 1026 1049 0.97

13 13 0.0041 0.78 11.9 5.5 1 23 1087 1110 1087 1110 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.2e-05	0.0042	19.0	0.2	2	23	578	599	577	599	0.96
2	13	0.011	2.2	10.5	2.9	3	23	624	644	623	644	0.97
3	13	0.00073	0.14	14.2	0.0	2	23	675	696	674	696	0.96
4	13	0.0011	0.2	13.7	0.1	2	23	728	749	727	749	0.94
5	13	2.4e-05	0.0046	18.9	1.3	1	23	769	791	769	791	0.98
6	13	0.34	65	5.8	3.7	2	23	800	821	799	821	0.97
7	13	0.011	2.1	10.5	1.2	1	21	828	848	828	850	0.94
8	13	0.0026	0.5	12.5	2.1	1	23	856	879	856	879	0.95
9	13	5.1e-05	0.0098	17.9	0.3	3	23	886	906	885	906	0.99
10	13	1.6e-06	0.00031	22.6	2.4	1	23	912	935	912	935	0.95
11	13	0.0081	1.5	10.9	1.9	1	23	981	1004	981	1004	0.97
12	13	0.0003	0.057	15.5	2.2	1	23	1026	1049	1026	1049	0.97
13	13	0.0041	0.78	11.9	5.5	1	23	1087	1110	1087	1110	0.97

Sequence Information

Coding Sequence: atggacAGCGCAGTAGAGCCTGTGCCTGATGAAGGCGAAATTTCATCATTCACCACAAATGCCAATTGGGCTACATCCCAATCAAACAATCCATCGAATTCGACACTTTTATTCATCGCAgttgAATATGTCAAAGATAACACATCAGCCGActacaaatttgaaactgactCATCATTCTCACCACAACCTTCCACCTACAGTTCAGAATTCGACCAACATGTTTCCCCCTTAGATCCAAATATGAGTTCAACGGCTCGATATTCTCCTGTTTATTCGGAGGAGCCTGTTTCGGCCGCCAGCGGGACTTCCACAGGGTACAGCACTCCTGTTGTTGTTCCGTTGATGTCGACAGAGCTGGAGGGCGCAGCACCTCCTGCAGGCGACTCCTGTTTTCAAGACATCGCTGACGCTGATACCCAACTTTTGAGGCAAGTTGTAGGGAGTAGATATTTGCAGATGGTCGCTGCGTCCGGACAGATTGACGCTGGGGAAAGTGAAGATGCTACGGGAGGAGTTCATATTGATTACAACTCAAgtaGGTCTCCGGAAGTAGATGAACAATTGATAAACAAAGAATTGCAGTTGGTTCAGTTTCCGATCAATAGTTATCAGCAGCAACTTTCTATGGTTGAGCGTAATTTGAAAGTTGATCCGGATCAAGTTGAATTGTTGATTACTGATCAAAATACAGGGATTTCTTATAGCTATGTTTCTCAAgATTTTTTGGTTAGCCGTACACCTTTGCCGTCTTTACCAGAAGACGAACAACAATTGAATAacgttttaaatactttagagTCACATGGACTCGTAATGGAAACAAATGATGACGGAGATATAAGCGAAATAACAACCCAAAATTCTGGGTTGACAATTTCTGACGGGCAGATGATGTTGCAAGATCCACTTTTAGACTCTGATCTTCTTTTACAAaCTCCGGTAGAAATTGCACTAGATGATAACGTACTCTCCGCACCAAATAGTTTAGTTTTAAAACCAGAATTGCCTCCTACTAATCAGCTACTTCCATCGGAAGTACTCAACGCACCCCAAAGTGTCCATGAACGAAGAACACCTGAACATATTCCCGATAAATTTGCTGTGGTGAATGTTAAAGAAGAGCATCTAGATTTTGATGAAGCCAGCGTGAAGATAGAATTTGAAGCACAGCAGCTTCGCCGATCTCGAAGGCAGAATGATCGACAGAGCTTGGATGACGACACGCATTTGTTAAATCGGGTTCAAAGTATTAGTGATAAGCCGGTTCCTTCAAGGGCTAGAGCAACTCTACCTGCGACGTATTTGGTTATTAATAAATTGCCTCCTTCGTCTCCTGATGTTGAACCagaatTCGGAGTATTTGCAAGGAAGGCAATCCCAAAACGCACACAATTCGGACCTTTAGAAGGAGTCGTCCTAGATAGAGCCCTGACACAAACTGAAACAAATTCGAACGAACTCAAACTATTACTTGAATCTGACACTGGATCTATGCATCGATTGGATATTTCAGATGAAAATTCTTCGAACTGGATGAGATTTGTGCGACcagcaaagaatttcaatgaacaaaatttagttttaagtcaGCAAGGATActctttgtattttattacgACGCGAGCGATTTTACCTCGACAAGAATTAcaagTTGGATATAGCGCACTTTATGCTGCTAAGCGCAAATTACCAACTTTACAACCAGCTCCTGAAGATGAAAATACTTGGCCATGTTTTGAATGCCCACTTAGGTTTACAACTTCGGAAGATTTGCAGAAGCATTTGAACGTCCACGACGAAAATAAAgATGAAAGTGTGAAACATCGAGTAAAGAAATTAGGACGTCTCAAACGCCGCCCAGTAGATTGTCCGCATTGTTCTAGATCTTTTCTTCGACGGCAGAGTCTTAGCCGTCATCTTCTACAGCATAACAATCCGGGTGCGTTCCGCGAGAGACAAGTTCGATACATTCGAAGAATGAATGTTTCTACTGACGCAATAGAtaaaaatttGGAATGGAAATGCGATATTTGCAACCTCTATTTCCCAACGCCATCTTTATTGAATCTTCATGAACTTGTACATAAAAGTGAAAATTCCGAAACTATAACTGGACTGCCAGTGGATTTGGGTTCGGGGTGCAATGAGGGTGAATTTTTGGTGCACAATGGTGCCGTGCAGTGTCCTCAATGCGGTATGGAATACACTAGCAGAAAATCCTTAATTGAACATGTTTCGGATCACGGTAAGAAACACCCGAATGGTTGTGGTGATTTCGGGTCGGAACAGCAAAAGAAAGGCTTTAAATGTTACATGTGCTACAAAGCCTTTGCCTCTAGAGATCGACTTcagcGACACATGTTAGTCCACGGTTCCGAAGATTCCAAACCCTTAAAATGCGATACTTGTTCTAAACGATTTTTGAATAACTCTGCTTTATCTTGCCATTTAAAAACTCACAAATtggacaaaaaaatatttgaatgtcccATTTGTAAAACGTCTTTCGACCAAATATTACTTCTTAAAGAACATGTAAGATGTCATTGCATCGATGGTATTTATACTTGTCCACATTGCAATAAGATTTTCAAGGAATACAGCATAATTAGAAAACACATCCGCGCTTTTCACTGTGAAAGGAAACATGGTTGCCAATATTGCGGCAAGCCATTTCCTACTTTGGATAAACTACGGATGCATTTGTTGAAACATAGTGATCATCGGGAATTTTTGTGCTCTGAATGTGGAAAACAGTTTAAGAGAAAGGATAAATTGAAGGAACATATGAAACGAATGCATGCGGCTGATCGAGAACCATCTGCACGATTCGCCAACGCTGCTGCGAAGTCGAAGAATAATTCTGGAAACAGCGGCGGCAGCAACGTCAAGAAATTCATGCCCAAAgtTCAGCCAACGGACTACCACCGATTTATTTACAAGTGTCATAGTTGCCTGCTAGGTTTCAAACGACGCGGTATGCTAGTAAACCACCTCGCTAAACGCCACCCCGACATCAGCCCCGAATCAGTCCCGGAGTTAAACCTcccaattttaaaaacaacccGTGATTATTACTGCCAATACTGCGAGAAAGTCTACAAAAGCAGCTCAAAACGCAAAGCGCACATCTTGAAGAACCATCCAGGACTAGAGCTTCCGATGTCCAACCGCCGCAAAGGAGGCTTTCCTGATATCCCAGGGGTTCCAAATCCTACCTTCTCGCAAACTGTAGGAAGCGTTACAACCAATCCGCATTCGTGTCAGTGGTGCCACAAACAGTATGCGTCAAAAGCAAAGTTGCTGCAACATCAAAGGAAGAAGCACCAGGATATGTTGCCGACAGCGCAGAAACAACCCAGGCAGGCTACTAAGATTGGGAACCAGCAGATGATGATGCAACAGCAACCTCAATCTCCAGGAATTCCAGAAGAAGGCAAGTTCATGAACTCTCCCGATGTTCCGGACTCTGCAGTTGGGTCCACTGTTCTCGCTGAAGATGTCATCAACGAAGTTTCGGAAGAACAATTAAATGCTTTTACAACTAATGGTTATATGCATTGCGACGATACCAAGGTTGCGTTAACTGCCAATAATATCAAACAGACTTATAAGCTGGCGGAAGAATCGTTGCTGAATCAAGCGGTGGAGGATTTCGAGGACTGTCGAGGAGCAAACGGTCAATACTACCGCTTAATCCAAATGTCATCAGGACAACTAATTGGGCAGTCAGACGAATCGATCGACGATCCGCCAGAACCAAGCCGGCTGTATCGACTTCTAACGGCCAACGGTCCATTTCCGCCGTATCCGCCACGCTGA
Protein Sequence: MDSAVEPVPDEGEISSFTTNANWATSQSNNPSNSTLLFIAVEYVKDNTSADYKFETDSSFSPQPSTYSSEFDQHVSPLDPNMSSTARYSPVYSEEPVSAASGTSTGYSTPVVVPLMSTELEGAAPPAGDSCFQDIADADTQLLRQVVGSRYLQMVAASGQIDAGESEDATGGVHIDYNSSRSPEVDEQLINKELQLVQFPINSYQQQLSMVERNLKVDPDQVELLITDQNTGISYSYVSQDFLVSRTPLPSLPEDEQQLNNVLNTLESHGLVMETNDDGDISEITTQNSGLTISDGQMMLQDPLLDSDLLLQTPVEIALDDNVLSAPNSLVLKPELPPTNQLLPSEVLNAPQSVHERRTPEHIPDKFAVVNVKEEHLDFDEASVKIEFEAQQLRRSRRQNDRQSLDDDTHLLNRVQSISDKPVPSRARATLPATYLVINKLPPSSPDVEPEFGVFARKAIPKRTQFGPLEGVVLDRALTQTETNSNELKLLLESDTGSMHRLDISDENSSNWMRFVRPAKNFNEQNLVLSQQGYSLYFITTRAILPRQELQVGYSALYAAKRKLPTLQPAPEDENTWPCFECPLRFTTSEDLQKHLNVHDENKDESVKHRVKKLGRLKRRPVDCPHCSRSFLRRQSLSRHLLQHNNPGAFRERQVRYIRRMNVSTDAIDKNLEWKCDICNLYFPTPSLLNLHELVHKSENSETITGLPVDLGSGCNEGEFLVHNGAVQCPQCGMEYTSRKSLIEHVSDHGKKHPNGCGDFGSEQQKKGFKCYMCYKAFASRDRLQRHMLVHGSEDSKPLKCDTCSKRFLNNSALSCHLKTHKLDKKIFECPICKTSFDQILLLKEHVRCHCIDGIYTCPHCNKIFKEYSIIRKHIRAFHCERKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHAADREPSARFANAAAKSKNNSGNSGGSNVKKFMPKVQPTDYHRFIYKCHSCLLGFKRRGMLVNHLAKRHPDISPESVPELNLPILKTTRDYYCQYCEKVYKSSSKRKAHILKNHPGLELPMSNRRKGGFPDIPGVPNPTFSQTVGSVTTNPHSCQWCHKQYASKAKLLQHQRKKHQDMLPTAQKQPRQATKIGNQQMMMQQQPQSPGIPEEGKFMNSPDVPDSAVGSTVLAEDVINEVSEEQLNAFTTNGYMHCDDTKVALTANNIKQTYKLAEESLLNQAVEDFEDCRGANGQYYRLIQMSSGQLIGQSDESIDDPPEPSRLYRLLTANGPFPPYPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275624; iTF_00029580; iTF_00470221; iTF_00769081; iTF_00767490; iTF_01105015;
90% Identity: iTF_01275624;
80% Identity: -