Basic Information

Insect: Pterostichus niger
Gene Symbol: prdm10
Assembly: GCA_947425015.1
Location: OX380338.1:36328700-36336116[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.8e-05 0.0026 19.6 0.2 2 23 579 600 578 600 0.96

2 13 0.0071 1 11.5 2.1 3 23 625 645 623 645 0.96

3 13 0.0021 0.3 13.1 0.0 2 23 676 697 675 697 0.96

4 13 0.001 0.15 14.1 0.1 2 23 729 750 728 750 0.94

5 13 3.1e-05 0.0044 18.9 1.3 1 23 770 792 770 792 0.98

6 13 0.44 62 5.8 3.7 2 23 801 822 800 822 0.97

7 13 0.014 2 10.5 1.2 1 21 829 849 829 851 0.94

8 13 0.0034 0.48 12.5 2.1 1 23 857 880 857 880 0.95

9 13 6.6e-05 0.0094 17.9 0.3 3 23 887 907 886 907 0.99

10 13 2.1e-06 0.0003 22.6 2.4 1 23 913 936 913 936 0.95

11 13 0.01 1.5 10.9 1.9 1 23 982 1005 982 1005 0.97

12 13 0.00011 0.016 17.1 2.3 1 23 1027 1050 1027 1050 0.97

13 13 0.0053 0.75 11.9 5.5 1 23 1088 1111 1088 1111 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.8e-05	0.0026	19.6	0.2	2	23	579	600	578	600	0.96
2	13	0.0071	1	11.5	2.1	3	23	625	645	623	645	0.96
3	13	0.0021	0.3	13.1	0.0	2	23	676	697	675	697	0.96
4	13	0.001	0.15	14.1	0.1	2	23	729	750	728	750	0.94
5	13	3.1e-05	0.0044	18.9	1.3	1	23	770	792	770	792	0.98
6	13	0.44	62	5.8	3.7	2	23	801	822	800	822	0.97
7	13	0.014	2	10.5	1.2	1	21	829	849	829	851	0.94
8	13	0.0034	0.48	12.5	2.1	1	23	857	880	857	880	0.95
9	13	6.6e-05	0.0094	17.9	0.3	3	23	887	907	886	907	0.99
10	13	2.1e-06	0.0003	22.6	2.4	1	23	913	936	913	936	0.95
11	13	0.01	1.5	10.9	1.9	1	23	982	1005	982	1005	0.97
12	13	0.00011	0.016	17.1	2.3	1	23	1027	1050	1027	1050	0.97
13	13	0.0053	0.75	11.9	5.5	1	23	1088	1111	1088	1111	0.97

Sequence Information

Coding Sequence: ATGGATAGTGCAGTGGAGTCTGTGCCTGACGAAGGTGAAATTTCTACATTTGCCTCAAATGGTAATTGGGCAGCGTCACAATCATCAAACAATCCATCGAATTCTACACTTTTATTTATTGCTGTTGAATATGTCAAAGATAATACACCAGCCGACTATAAATTTGAAACTGATTCATCATTTTCACCACAACCATCTACATACAGTTCAGAATTCGATCAACATGTTTCCCCCCTAGATCCAAATATGAGTTCAACAGCTCGATACTCTCCCGTTTATTCGGAGGAGCCCGTTTCAGCCACCAGCGGAACCTCTACTGGGTACAGCACTCCTGTAGTTGTCCCGCTGATGTCTACAGAGCTTGAGGGCGCAGCACCTCCTGCTGGTGACTCCTGTTTTCAAGACATCGCTGATGCAGACACCCAACTTTTGAGGCAAGTTGTCGGTAGCAGATATTTGCAAATGGTTGCTGCTTCTGGGCAAATAGAGGGGGCTGATGGTGAGGATACTACGGCCGGAGTTCATCTTGATTATAATCAAAGGTCTCCGGAAGTAGATGAACAGTTGATAAATAAAGAATTACAATTAGTTCAGTTTCCAATTAATAGTTACCAGCAACAGCTTTCTATGGTTGAGCGTAATTTAAAAGTAGATCCAGATCAAGTTGAATTGTTAATCACTGATCAAAATACAGGAATTTCTTATAGCTATGTATCTCAAGATTTCTTGGTTAGCCGCACTCCTTTACCGTCTTTACCGGAAGACGAACAACAATTAAATAATGTATTAAATAGTTTAGAATCACATGGACTTGTAATGGAAACAAATGATGACGGTGATATTAGTGAAGTAACTGCCCAAAATTCAGGGTTGACAATTGCTGATGGTCAGATGATGTTACAAGATCCACTTTTGGACTCTGATCTACTTTTACAAGCACCAGTAGAAATCGCTTTAGATGACAACGTTCTTTCTGCACAAAATAATTTAGTTTTAAAATCGGAATTGCCTCCTCCTACTCAGCTACTTCCTCCGGAAGTTCTTAGCGCCCCTCCAAGAGTCCGTGAACAAGAAACAACACATCACATCTCCGATAAGTTCGAGGTGGTGAATATTAAAGAAGAGAATTTAGATTTTGATGAAGCCAATGTGAAGACAGAATTTGAAGCACAGCAACTTCGACGATCTCGAAGACAGAATGATCGACAAAGTTTGGACGATGACACTCATTTATTAAATCGAGTTCAAAGTATCAGTGATAAGCCGGTGCCTTCGCGAGCGAGAGCTACTTTACCAGCTACTTACCTGGTTATTAATAAAATTCCTTCTACTTCTCCAGATACTGAACCAGAATATGGAGTATTTGCAAGGAAAGCAATCCCAAAACGCACACAATTTGGTCCTTTAGAAGGAGTTCTCCTAGATTCGATCCTGACTTCTCAAACTGATACAAATTCGAACGAATTTAAACTTTTACTTGAATCTGAAACTGGTTCCATGCATCTTTTAGACATTTCAGATGAAAATTCTTCAAACTGGATGAGATTTGTGCGACCAGCAAAGAATTTTAATGAACAAAATTTAGTATTAAGTCAACAAGGATATTCTTTGTATTTTACTACAACACGGGCAATTTTACCTCGACAAGAATTACAAGTTGGATACAGCGCACTTTATGCAGCTAAACGCAAACTACCAACCTTGCAACCAACTACTGAAGATGAAAATACTTGGCCATGTTTTGAATGTCCGCTTAGGTTCACTACTTCGGACGATTTACAGAAGCATTTAAACGTTCATGACGAAACTAAGGATGAAAATGTAAAACATCGGGTGAAAAAATTAGGACGTATAAAACGTCGTCCGATAGATTGTCCACATTGTTCAAGATCTTTTCTTCGAAGACAAAGTCTTAGCCGCCATCTTTTACAGCACAGTAATCCGAACGCATTTCGCGAAAGACAAGTTCGTTATATTCGACGAAATAACATATCCACTGATGTAATAGATAAAAATTTGGAATGGAAGTGCGATATTTGTACAATATATTTTCCAACTCCATCATTGTTAAATCTTCATGAACTTGTGCACAAAAATGAAAATTCGGAAACTATAACTGGCCTACCCTTAGATTTGGGTTCAGGATGCAATGAAGGTGAATTTTTGGTGCACAATGGTGCTGTTCAGTGCCCTCAATGCGGTATGGAATATACGAATCGAAAATCTTTGATTGAACACGTTTCGGATCATGGTAAAAAACACCCAAATGATTCTAACAACTTTGTATCCAATCAACCGAAAAAGGGATTTAAATGTTACATGTGCTATAAAGCATTTGCTTCGAGAGATCGACTGCAGCGACACATGTTAGTCCATGGATCCGAAGATTCCAAACCATTAAAATGTGACACTTGTTCAAAAAGATTTTTGAACAATTCTGCTTTGTCTTGCCACTTAAAAACTCATAAATTAGACAAGAAAATATTTGAATGTCCCATTTGTAAAACTTCGTTTGACCAAATTTTACTTTTGAAAGAACATGTTAGGTGTCATTGTATAGATGGAATTTACACTTGTCCTCATTGCAATAAGATTTTTAAGGAATACAGCATAATTAGAAAACACATTCGTGCTTTTCATTGTGAAAGGAAACACGGTTGCCAGTATTGTGGCAAACCTTTTCCAACTTTGGATAAACTACGGATGCATTTGTTGAAACACAGTGATCATCGTGAATTTTTATGCTCTGAATGTGGAAAGCAGTTTAAACGAAAGGATAAACTAAAAGAACACATGAAACGGATGCATACTGCTGACCGAGAACAGTCTGCACGATTTTCCAACGCCGCTACTAAATCCAAGAATAATTCTGGAGGGAACAGTGGCAATAATGTTAAGAAATTCATGCCCAAAGTTCAGCCGACTGACTACCACCGATTTATATACAAATGTCACAGTTGTTTATTAGGCTTTAAACGTCGAGGAATGCTTGTAAATCACCTCGCTAAACGTCACCCTGACATCAGCCCTGAATCAGTCCCTGAACTCAACCTCCCAATTCTAAAAACAACCCGCGATTATTACTGTCAATACTGCGACAAAGTCTATAAAAGCAGCTCAAAACGTAAAGCGCACATTCTGAAAAATCATCCAGGATTGGAACTCCCGATGTCCAACCGACGCAAAGGAGGGTTCCCAGAGATTCCAGGAGTTCCAAATCCCACGTTCTCGCAGACTGTGGGCAGTGTGACAACTAATCCGCATTCGTGTCAGTGGTGCCACAAACAGTATGCCTCCAAAGCTAAGTTATTGCAGCATCAGAGGAAGAAACATCAGGATATGTTACCGATTGCGCAGAAACAACCTAGACAAGCTACCAAGATGGTCACTCAACAGATGATGATGCAGCAGCAGCCCCAATCACCAGGAATTCCTGAAGAAGGCAAGTTTATGAATTCTCCGGATGTGCCGGATTCGGCAGTTAGTTCAAGTGTCCTCGCTGAAGATGTCATCAATGAAGTTTCGGAAGAACAATTAAATGCTTTTACAACAAATGGTTATATGCATTGTGATGATGTCAAAGTTGCTCTAACTGCTAGTAACATCAAACAAACATACAAGCTGGCTGAAGAATCGTTGCTAAACCAAGCAGTAGAAGACTTCGAAGATTGTCGAGGTACAAACGGCCAATACTATCGATTAATTCAAATGTCATCTGGACAATTAATTGGGCAATCAGACGAATCAATCGATGATCCCCCAGAACCAAGTCGACTTTATCGACTCTTAACGGCCAACGGTCCCTTCCCACCGTATCCGCCACGCTGA
Protein Sequence: MDSAVESVPDEGEISTFASNGNWAASQSSNNPSNSTLLFIAVEYVKDNTPADYKFETDSSFSPQPSTYSSEFDQHVSPLDPNMSSTARYSPVYSEEPVSATSGTSTGYSTPVVVPLMSTELEGAAPPAGDSCFQDIADADTQLLRQVVGSRYLQMVAASGQIEGADGEDTTAGVHLDYNQRSPEVDEQLINKELQLVQFPINSYQQQLSMVERNLKVDPDQVELLITDQNTGISYSYVSQDFLVSRTPLPSLPEDEQQLNNVLNSLESHGLVMETNDDGDISEVTAQNSGLTIADGQMMLQDPLLDSDLLLQAPVEIALDDNVLSAQNNLVLKSELPPPTQLLPPEVLSAPPRVREQETTHHISDKFEVVNIKEENLDFDEANVKTEFEAQQLRRSRRQNDRQSLDDDTHLLNRVQSISDKPVPSRARATLPATYLVINKIPSTSPDTEPEYGVFARKAIPKRTQFGPLEGVLLDSILTSQTDTNSNEFKLLLESETGSMHLLDISDENSSNWMRFVRPAKNFNEQNLVLSQQGYSLYFTTTRAILPRQELQVGYSALYAAKRKLPTLQPTTEDENTWPCFECPLRFTTSDDLQKHLNVHDETKDENVKHRVKKLGRIKRRPIDCPHCSRSFLRRQSLSRHLLQHSNPNAFRERQVRYIRRNNISTDVIDKNLEWKCDICTIYFPTPSLLNLHELVHKNENSETITGLPLDLGSGCNEGEFLVHNGAVQCPQCGMEYTNRKSLIEHVSDHGKKHPNDSNNFVSNQPKKGFKCYMCYKAFASRDRLQRHMLVHGSEDSKPLKCDTCSKRFLNNSALSCHLKTHKLDKKIFECPICKTSFDQILLLKEHVRCHCIDGIYTCPHCNKIFKEYSIIRKHIRAFHCERKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHTADREQSARFSNAATKSKNNSGGNSGNNVKKFMPKVQPTDYHRFIYKCHSCLLGFKRRGMLVNHLAKRHPDISPESVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGLELPMSNRRKGGFPEIPGVPNPTFSQTVGSVTTNPHSCQWCHKQYASKAKLLQHQRKKHQDMLPIAQKQPRQATKMVTQQMMMQQQPQSPGIPEEGKFMNSPDVPDSAVSSSVLAEDVINEVSEEQLNAFTTNGYMHCDDVKVALTASNIKQTYKLAEESLLNQAVEDFEDCRGTNGQYYRLIQMSSGQLIGQSDESIDDPPEPSRLYRLLTANGPFPPYPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226080;
90% Identity: iTF_01226080;
80% Identity: -