Basic Information

Insect: Harpalus rufipes
Gene Symbol: PRDM10
Assembly: GCA_951394225.1
Location: OX596275.1:49579953-49600867[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0026 0.57 12.6 1.0 2 23 579 600 578 600 0.96

2 13 0.0069 1.5 11.3 2.2 3 23 625 645 623 645 0.96

3 13 0.0092 2 10.9 0.0 2 23 675 696 674 696 0.96

4 13 0.0024 0.51 12.7 0.0 2 23 728 749 727 749 0.95

5 13 2.6e-05 0.0056 18.9 1.3 1 23 767 789 767 789 0.98

6 13 0.36 79 5.8 3.7 2 23 798 819 797 819 0.97

7 13 0.014 3.1 10.3 1.0 1 21 826 846 826 848 0.94

8 13 0.0065 1.4 11.3 0.5 1 23 854 877 854 877 0.95

9 13 5.4e-05 0.012 17.9 0.3 3 23 884 904 883 904 0.99

10 13 1.7e-06 0.00038 22.6 2.4 1 23 910 933 910 933 0.95

11 13 0.0086 1.9 11.0 1.9 1 23 978 1001 978 1001 0.97

12 13 9.2e-05 0.02 17.2 2.3 1 23 1023 1046 1023 1046 0.97

13 13 0.0043 0.95 11.9 5.5 1 23 1084 1107 1084 1107 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0026	0.57	12.6	1.0	2	23	579	600	578	600	0.96
2	13	0.0069	1.5	11.3	2.2	3	23	625	645	623	645	0.96
3	13	0.0092	2	10.9	0.0	2	23	675	696	674	696	0.96
4	13	0.0024	0.51	12.7	0.0	2	23	728	749	727	749	0.95
5	13	2.6e-05	0.0056	18.9	1.3	1	23	767	789	767	789	0.98
6	13	0.36	79	5.8	3.7	2	23	798	819	797	819	0.97
7	13	0.014	3.1	10.3	1.0	1	21	826	846	826	848	0.94
8	13	0.0065	1.4	11.3	0.5	1	23	854	877	854	877	0.95
9	13	5.4e-05	0.012	17.9	0.3	3	23	884	904	883	904	0.99
10	13	1.7e-06	0.00038	22.6	2.4	1	23	910	933	910	933	0.95
11	13	0.0086	1.9	11.0	1.9	1	23	978	1001	978	1001	0.97
12	13	9.2e-05	0.02	17.2	2.3	1	23	1023	1046	1023	1046	0.97
13	13	0.0043	0.95	11.9	5.5	1	23	1084	1107	1084	1107	0.97

Sequence Information

Coding Sequence: ATGGATAGTGCAGTACAATCTGTACATGATGAGAATGAAATCTCGTCTTTTGCCTCCAATGTCAACTGGCAACAGACACAACCAAACAACAATGCATCAAATTCGACACTTTTGTTTATTGCCGTCGAATATGTTAAAGACAATCATTCTTCCGATTACAAATTCGAAACAGATTCATCATTTTCGCCTCAACCATCCACCTACAGCTCAGAATTCGATCAACATGTATCCCCCTTAGATCCAAATATGAGTTCCACAGCTCGATATTCTCCAGTTTACTCCGAAGAGCCTGTCTCGACTTCTAGTGGGGCCTCTACGGGGTACAGCACTCCGGTTGTTGTGCCGTTGATGTCTACGGAATTGGAGGGCGGAACGCAAGCTACAACTGATTCTTGTTTTCAAGATATTGCGGATGCTGATACTCAGCTTTTGAGGCAGGTTGTTGGGAATAGGTATTTGCAGATGGTTACTGCTTCGGGACAGATTGAAGGAGAGAGTGATGAGAATACTGGGGGAGTTAGCATCGACTACAATCAAagGTCTCCTGAAGTAGATGAGCAAATAATGAATAAAGAATTACAATTAGTTCAATttccaattaataattatcagcaGCAGCTTTCAATTGTTGATCGCAATATGAAAGTTGATCCAGATCAAGTTGAATTGTTGATTACTGATCAAAATACTGGAATTTCTTACAGTTATGTACCACAAgaTTTTTTGGTGAGCCGTACTCCACTTCCGTCTCTTCCAGAAGACgaacaacaattaaataatgttttaaacactTTGGAGTCTCATGGACTCGTTATGGAAACCAATGACGATGCAGATATTGGTGAAGTCAATGTTCAAAACCCAACTTTGAATATTTCGGATGGACAGATGATTTTGCAAGATCCCCTTATGATATCCGACTCCGATTTATTGTTACAAGCACCTGTGGAAATAGCCCTCGACGATAACGTCCTCTCTGCACCTCCTCTAGTTTTAAAGCCGGATCTTCCTCCATCAAATCATTTAATTCCTTCAGAAGTTCTAAACACTTCTCCAAACATTGACCAAGGTACATCACAACTAATTTCTGGTAAATACGATGTTGCTGGCGTTAAGCTAGAAAATATGGAATATGACGAAGCCAGTGTGAAGTCAGAATTTGACGCGCAGCAGTTACGACGATCGAGGAGGCAGAATGATCGACCGAGTTTGGACGACGACACGAACCTACtgAACCGTGTTCAAAGTATCAGCGACAAGCCAGTTCCATCTAGGGCTCGGGCAACTTTGCCCGAACattatttagttattaataaaatatctggAGCTACTCCTGATACTGAACCAGaaTATGGCGTATTTGCCCGTAAAGCAATAGCTAAACGCACACAATTTGGCCCATTAGAAGGCGTTTTATTAGATACACCTTTGAATTTGGATGAATCTGATATAATTACGAAcgatttgaaactttttttggaATCTGAAACTGGCGCCATGCACAAACTAGACATTTCCGATGAAAaTAATTCTAATTGGATGAGATTTGTCAGATACGCTAAGAATTACACCGAACAGAATTGTATTTTGAGCCAACAAGGTTACAATTTGTATTTTACCACAACTAGGGCCATCTTACCACGACAAGAACTGCAAGTCGGTTATTGTTCAACCTACGCCGCCAAACGTAAACTCCCAACTCTTCAACCCGCGCCCGAAGACGAAAACACATGGCCATGTTTTGAATGTCCTCAGAAATTCACCTGTTCAGATGATTTGCAAAAACATTTAAACGTGCACGACGAAAACAAAGAAGAAAGTATGAAGAAGAATGTGAAGAAACTCGGAAGATTGAAGCGCAGACCGATAGATTGTCCACATTGCTCGAGAACTTTCCTTCGAAGACAAAGTTTGAGCCGGCATCTTTTACAGCACAACAATCCAGCAGCGAGGGAGAGACAAGTTAGATATATTCGAAGAATGAACGTTTGCACCGAAAATATAGATAAAAATTTAGAATGGAAATGCGATATTTGTGCCATATACTTCCCAACGCCATCTTTATTAAATCTTCACGAATTGATACACCAAAATGGAAGTAATGAAACTATAACTGGTCTGCCATTAGATTTGGGTTCTGGGTGCAATGAAGGAGAATTTTTGGTGCATAGTGGCGCCGTGCAATGCCCGGAATGCGGTAACGAGTACTCTAGTCGCGAATCTTTGATCGATCATGTTACCGAACATGGCAAAAAACATCCATTGGGACAAGCAAGCAATCAAATACCAAAAAAAGGATTCAAGTGTTACATGTGTTACAAAGCTTTCGCATCGAGAGATCGTCTACAACGTCACATGTTGGTCCACGGTTCCGAAGAATCCAAACCCTTAAAATGCGATACTTGTTCGAAaagatttttaaacaattccgcACTGTCTTGCCATTTAAAAACCCACAAACTTGacaaaaagatttttgaatGTCCCATATGCAAAATGTCATTTGATCAGATTCTACTTTTAAAAGAACACGTTCGCTGTCACTGTATTGATGGTATCTACACTTGCCCCGTTTGCAGTAAGATTTTTAAAGAATACAGCATAATTCGAAAACATATTCGTGCTTTTCATTGTGAAAGAAAGCACGGATGTCAATATTGTGGAAAACCGTTCCCGACTTTGGATAAATTGAGGATGCATTTGTTGAAACATAGTGATCATCGGGAGTTTTTATGTTCGGAATGTGGGAAGCAGTTTAAAAGAAAAGATAAATTGAAGGAACACATGAAGAGGATGCATTCGGAAGATCGAGAACCAACAAAGATTATAAATTCGGCAACGAAATCGAAGAATAATTCGCCTGGGACCAGCGGGGCGAACATGAAGAAATTCATGCCGAAAGTGCAACCGACAGACTACCACCGATTTATTTACAAATGCCACAGTTGTCTTTTGGGCTTCAAACGCCGCGGAATGCTCGTCAACCATCTCGCTAAACGCCATCCAGACATCAGTCCAGATTCTGTCCCAGAACTAAACCTCCCAATTTTAAAAACAACTCGCGACTACTACTGTCAATATTGTGACAAAGTTTACAAAAGCAGCTCGAAGCGCAAAGCGCATATCTTGAAAAACCATCCAGGTTCGGAGCTGCCTATGTCCAATCGGCGCAAGGGAGGTTTCCCAGATATTCCAGGGGTTCCAAATCCGACATTTTCGCAGACTGTTGGAAGTGTGACTACAAATCCGCATTCGTGTCAATGGTGCCATAAACAGTATGCCTCAAAAGCTAAACTGTTGCAACATCAGAGAAAGAAGCATCAAGATATGTTGCCTACGGCACAAAAACAACCGAGACAAGTTGCGAAAATTGTCGGACAACAAATAGTTCAGCAGCAACCACAATCACCagGTATTCCGGAAGATGGTAAACTAATGAATTCTCCAGATATTCCGGAAACGGCAGTAGGACCAACAATTTTATCTGATGATGTAATGCATGAAGTGTCAGATGATCATTTGAGcgtttttacaaataatagttACATGCATTGTGATGATACGAAAATTGGTTTGACTGCCAACACAATCAAACAGAATTATAAGTTGGCCGAAGAATCTCTTCTAAACCAAGCAGTGGAAGACTTTGAAGAATGCCGGGGTCCAAACGGCCAATACTACCGCCTGATTCAAATGTCTTCAGGCCATTTGATGAACCAATCTGAGGAATCGATCGACGATCCTCCGGAACCTAGTCGCTTGTACCGTCTTCTCACCGCGAACGGTCCATTTCAGCCATGTCCACCTCGCTGA
Protein Sequence: MDSAVQSVHDENEISSFASNVNWQQTQPNNNASNSTLLFIAVEYVKDNHSSDYKFETDSSFSPQPSTYSSEFDQHVSPLDPNMSSTARYSPVYSEEPVSTSSGASTGYSTPVVVPLMSTELEGGTQATTDSCFQDIADADTQLLRQVVGNRYLQMVTASGQIEGESDENTGGVSIDYNQRSPEVDEQIMNKELQLVQFPINNYQQQLSIVDRNMKVDPDQVELLITDQNTGISYSYVPQDFLVSRTPLPSLPEDEQQLNNVLNTLESHGLVMETNDDADIGEVNVQNPTLNISDGQMILQDPLMISDSDLLLQAPVEIALDDNVLSAPPLVLKPDLPPSNHLIPSEVLNTSPNIDQGTSQLISGKYDVAGVKLENMEYDEASVKSEFDAQQLRRSRRQNDRPSLDDDTNLLNRVQSISDKPVPSRARATLPEHYLVINKISGATPDTEPEYGVFARKAIAKRTQFGPLEGVLLDTPLNLDESDIITNDLKLFLESETGAMHKLDISDENNSNWMRFVRYAKNYTEQNCILSQQGYNLYFTTTRAILPRQELQVGYCSTYAAKRKLPTLQPAPEDENTWPCFECPQKFTCSDDLQKHLNVHDENKEESMKKNVKKLGRLKRRPIDCPHCSRTFLRRQSLSRHLLQHNNPAARERQVRYIRRMNVCTENIDKNLEWKCDICAIYFPTPSLLNLHELIHQNGSNETITGLPLDLGSGCNEGEFLVHSGAVQCPECGNEYSSRESLIDHVTEHGKKHPLGQASNQIPKKGFKCYMCYKAFASRDRLQRHMLVHGSEESKPLKCDTCSKRFLNNSALSCHLKTHKLDKKIFECPICKMSFDQILLLKEHVRCHCIDGIYTCPVCSKIFKEYSIIRKHIRAFHCERKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHSEDREPTKIINSATKSKNNSPGTSGANMKKFMPKVQPTDYHRFIYKCHSCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGSELPMSNRRKGGFPDIPGVPNPTFSQTVGSVTTNPHSCQWCHKQYASKAKLLQHQRKKHQDMLPTAQKQPRQVAKIVGQQIVQQQPQSPGIPEDGKLMNSPDIPETAVGPTILSDDVMHEVSDDHLSVFTNNSYMHCDDTKIGLTANTIKQNYKLAEESLLNQAVEDFEECRGPNGQYYRLIQMSSGHLMNQSEESIDDPPEPSRLYRLLTANGPFQPCPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226080;
90% Identity: iTF_00767490; iTF_01105015;
80% Identity: -