Basic Information

Insect: Harpalus rubripes
Gene Symbol: PRDM10
Assembly: GCA_963082715.1
Location: OY720451.1:5279660-5303706[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0048 1.2 12.0 1.0 2 23 577 598 576 598 0.96

2 13 0.008 2 11.3 2.2 3 23 623 643 621 643 0.96

3 13 0.01 2.6 10.9 0.0 2 23 673 694 672 694 0.96

4 13 0.0022 0.55 13.0 0.0 2 23 726 747 725 747 0.95

5 13 3e-05 0.0076 18.9 1.3 1 23 765 787 765 787 0.98

6 13 0.42 1.1e+02 5.8 3.7 2 23 796 817 795 817 0.97

7 13 0.00046 0.12 15.2 0.1 1 23 824 846 824 846 0.98

8 13 0.0076 1.9 11.3 0.5 1 23 852 875 852 875 0.95

9 13 6.4e-05 0.016 17.9 0.3 3 23 882 902 881 902 0.99

10 13 2e-06 0.00051 22.6 2.4 1 23 908 931 908 931 0.95

11 13 0.01 2.5 11.0 1.9 1 23 976 999 976 999 0.97

12 13 0.00011 0.027 17.2 2.3 1 23 1021 1044 1021 1044 0.97

13 13 0.0051 1.3 11.9 5.5 1 23 1082 1105 1082 1105 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0048	1.2	12.0	1.0	2	23	577	598	576	598	0.96
2	13	0.008	2	11.3	2.2	3	23	623	643	621	643	0.96
3	13	0.01	2.6	10.9	0.0	2	23	673	694	672	694	0.96
4	13	0.0022	0.55	13.0	0.0	2	23	726	747	725	747	0.95
5	13	3e-05	0.0076	18.9	1.3	1	23	765	787	765	787	0.98
6	13	0.42	1.1e+02	5.8	3.7	2	23	796	817	795	817	0.97
7	13	0.00046	0.12	15.2	0.1	1	23	824	846	824	846	0.98
8	13	0.0076	1.9	11.3	0.5	1	23	852	875	852	875	0.95
9	13	6.4e-05	0.016	17.9	0.3	3	23	882	902	881	902	0.99
10	13	2e-06	0.00051	22.6	2.4	1	23	908	931	908	931	0.95
11	13	0.01	2.5	11.0	1.9	1	23	976	999	976	999	0.97
12	13	0.00011	0.027	17.2	2.3	1	23	1021	1044	1021	1044	0.97
13	13	0.0051	1.3	11.9	5.5	1	23	1082	1105	1082	1105	0.97

Sequence Information

Coding Sequence: ATGGATAGTGCAGTTGAATCTGTACACGATGAGAGTGAAATCTCGTCTTTTGCGTCCAATGTCAACTGGCAACAGGCACAACCAAACAACAGTGCATCAAATTCGACACTTTTGTTTATTGCCGTCGAATATGTTAAAGACAATCATTCTTCCGACTACAAATTCGAAACAGATTCATCATTTTCGCCTCAACCATCCACCTACAGCTCAGAATTCGACCAACATGTATCCCCCTTAGATCCCAATATGAGTTCCACTGCTCGATATTCTCCTGTTTATTCCGAAGAGCCTGTCTCAACTTCTAGTGGGGCCTCTACGGGGTACAGTACCCCGGTTGTTGTGCCGTTGATGTCTACGGAATTGGAGGGCGGAACGCAAGCTACAACTGATTCTTGTTTTCAAGATATTGCGGATGCTGATACTCAGCTTTTGAGGCAGGTTGTTGGGAATAGGTATTTGCAGATGGTTACTGCTTCGGGACAGATGGAAGGGGAGAGTGATGAGAATACTGGAGGTGTTAGCATCGACTACAATGAAAGGTCTCCCGAAGTAGACGAGCAAATAATGAATAAAGAATTACAATTAGTTCAATTTCCAATTAATAATTACCAGCAACAGCTGTCAATTGTTGAACGCAACATGAAAGTTGATCCAGATCAAGTTGAATTGTTGATTACTGATCAAAATACTGGAATTTCTTATAGTTATGTACCACAAGATTTTTTGGTGAGCCGCACCCCACTTCCGTCTCTTCCAGAAGACgaacaacaattaaataatgttttaaacaCTTTGGAGTCTCATGGACTAGTTATGGAAACTAATGATGAAGCAGATATTGGTGAAGTCAATGTTCAGAATCCTACTTTGAATATTTCGGATGGGCAGATGATGTTGCAAGATCCGCTCATGATTTCTGACTCCGATTTACTTTTACAAGcACCTGTGGAAATAGCCCTCGACGATAACGTCCTCTCTGCACCTCCTCTAGTTTTAAAGCCGGATCTTCCTCCATCCAATCATTTAATTCCTCCAGAAGTTCTAAACACTTCTCCGAACCAAGATACAACACAAATAATTTCTGGTAAATACGATGTTGCTGGCGTTAAGCTAGAAAATATGGAATATGACGAAGCCAGTGTGAAATCGGAATTTGACGCGCAACAGTTACGACGATCGAGAAGGCAGAATGATCGACCGTGTTTGGACGAGGACACGAATATATtgaaccGTGTTCAAAGTATCAGCGACAAACCAGTCCCATCTAGGGCTCGAGCAACTTTGCCCGAACATTAtttagttattaataaaatatctggAGCTACTCCTGATGCTGAACCAGaatacGGAGTGTTCGCGCGTAAAGCAATAGCTAAACGCACACAATTTGGCCCATTGGAAGGCGTTTTATTAGATACGCCTTTGAATTTGGATGAAACTGATTTAATGACGAAcgatttgaaactttttttggaaTCTGAAACTGGAGCCATGCACAAATTAGACATTTCCGATGAAAataattctAATTGGATGAGATTTGTCAGATACGCTAAGAATTACACCGAACAGAATTGTATTTTAAGCCAGCAAGGTTACAATTTGTATTTTACAACAACTAGGGCCATTTTACCTCGACAAGAACTGCAAGTTGGTTATTGTTCCACCTACGCCGCAAAACGCAAACTCCCAACACTTCAACCGACGCCTGAAGACGAAAACACATGGCCATGTTTTGAATGTCCGCAAAAATTCACTTGTTCAGAAGATTTGCAGAAACATTTAAACGTGCACGACgaaaataaagaagaaagtATGAAGAAGAATGTGAAGAAACTCGGAAGATTGAAGCGCAGACCGATTGATTGTCCACATTGTTCGAGAACTTTCCTTCGAAGACAGAGTTTGAGCCGGCATCTTTTACAGCACAACAATCCAGCGGCGAGGGAGAGACAAGTTAGATATATCCGAAGAATGAACGTCTGCACCGAAAATATAgaTAAAACTTTAGAATGGAAATGCGACATTTGTGCCATATATTTCCCAACGCCGTCTTTGTTGAATCTTCACGAATTGGTACACCAAAACGGAAGTAATGAAACTATAACTGGTCTCCCATTAGATTTGGGTTCTGGGTGCAATGAAGGAGAATTTCTGGTGCATAGTGGCGCCGTGCAATGTCCGGAATGCGGTAACGAGTACTCTAGTCGAGAATCTTTAATCGATCATGTCTCCGAACATGGCAAAAAACACCCATTGGGACAAACAGTCAGCGTAATACCAAAAAAAGGATTCAAGTGTTACATGTGTTACAAAGCTTTTGCATCGAGAGACCGTCTACAACGCCATATGTTGGTCCACGGTTCGGAAGAATCCAAACCATTAAAATGCGACACTTGTTCAAAaagatttttaaacaattccGCACTTTCTTGTCATTTAAAAACCCATAAACTAGACAAAAAGATTTTTGAATGtcccatttgcaaaatttcattTGATCAAATCCTACTTTTAAAAGAACACGTTCGTAGTCACTGCATTGATGGCATCTACACTTGTCCAGTTTGCagtaaaattttcaaagaaTACAGCATTATTAGAAAACATATCCGTGCGTTTCATTGTGAGAGAAAGCACGGATGTCAATATTGTGGAAAACCGTTCCCGACTTTGGATAAATTGAGGATGCATTTGTTGAAACATAGTGATCATAGGGAGTTTTTGTGTTCTGAATGTGGCAAGCAGTTTAAAAGAAAAGATAAATTGAAGGAACATATGAAGAGGATGCATTCGGAAGATCGAGAACCGACGAAGATTATAAATTCGGCAACGAAATCGAAGAATAATTCGCCTGGGACCAGCGGGGGGAATATGAAGAAGTTCATGCCCAAAGTGCAACCGACAGACTACCACcgatttatttacaaatgccaCAGTTGTCTTTTGGGCTTTAAGCGTCGCGGAATGCTCGTCAACCATCTCGCTAAACGCCATCCAGACATCAGCCCAGATTCAGTCCCAGAATTAAACCTCCCAATTTTAAAAACAACTCGCGACTACTACTGTCAATATTGCGACAAAGTTTACAAAAGCAGCTCGAAGCGCAAAGCGCATATCTTGAAAAACCATCCAGGATCAGAACTGCCGATGTCCAATCGGCGTAAGGGAGGTTTCCCAGAAATTCCAGGAGTTCCAAATCCGACATTTTCGCAGACTGTGGGAAGTGTGACTACAAATCCGCATTCGTGTCAATGGTGCCATAAGCAGTACGCCTCAAAAGCTAAACTGTTGCAACATCAAAGGAAGAAGCATCAAGATATGTTGCCTACGGCCCAAAAACAACCGAGACAAGTTGCAAAAATTGTTGGGCAACAAATAGTTCACCAGCAACCACAATCaccagGTATTCCGGAAGATGGCAAACTAATGAATTCTCCAGATATTCCGGAAACGGCAGTAGGACCAACAGTTTTAACTGATGATGTAATGCATGAAGTGTCAGATGATCATTTGAGcgtttttacaaataatagtTACATGCATTGCGATGATACGAAAATTGGTTTGACTGCCAACACAATCAAACAGAATTACAAGTTGGCCGAGGAATCTCTTCTAAACCAAGCAGTGGAAGACTTCGAAGAATGCCGAGGTCCAAACGGCCAATACTACCGCCTGATCCAAATGTCTTCAGGCCATTTGATGAACCAATCCGAGGAATCAATAGACGATCCCCCGGAACCTAGTCGCCTGTACCGTCTTCTCACCGCGAACGGTCCATTTCAGCCATGTCCACCTCGCTGA
Protein Sequence: MDSAVESVHDESEISSFASNVNWQQAQPNNSASNSTLLFIAVEYVKDNHSSDYKFETDSSFSPQPSTYSSEFDQHVSPLDPNMSSTARYSPVYSEEPVSTSSGASTGYSTPVVVPLMSTELEGGTQATTDSCFQDIADADTQLLRQVVGNRYLQMVTASGQMEGESDENTGGVSIDYNERSPEVDEQIMNKELQLVQFPINNYQQQLSIVERNMKVDPDQVELLITDQNTGISYSYVPQDFLVSRTPLPSLPEDEQQLNNVLNTLESHGLVMETNDEADIGEVNVQNPTLNISDGQMMLQDPLMISDSDLLLQAPVEIALDDNVLSAPPLVLKPDLPPSNHLIPPEVLNTSPNQDTTQIISGKYDVAGVKLENMEYDEASVKSEFDAQQLRRSRRQNDRPCLDEDTNILNRVQSISDKPVPSRARATLPEHYLVINKISGATPDAEPEYGVFARKAIAKRTQFGPLEGVLLDTPLNLDETDLMTNDLKLFLESETGAMHKLDISDENNSNWMRFVRYAKNYTEQNCILSQQGYNLYFTTTRAILPRQELQVGYCSTYAAKRKLPTLQPTPEDENTWPCFECPQKFTCSEDLQKHLNVHDENKEESMKKNVKKLGRLKRRPIDCPHCSRTFLRRQSLSRHLLQHNNPAARERQVRYIRRMNVCTENIDKTLEWKCDICAIYFPTPSLLNLHELVHQNGSNETITGLPLDLGSGCNEGEFLVHSGAVQCPECGNEYSSRESLIDHVSEHGKKHPLGQTVSVIPKKGFKCYMCYKAFASRDRLQRHMLVHGSEESKPLKCDTCSKRFLNNSALSCHLKTHKLDKKIFECPICKISFDQILLLKEHVRSHCIDGIYTCPVCSKIFKEYSIIRKHIRAFHCERKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHSEDREPTKIINSATKSKNNSPGTSGGNMKKFMPKVQPTDYHRFIYKCHSCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGSELPMSNRRKGGFPEIPGVPNPTFSQTVGSVTTNPHSCQWCHKQYASKAKLLQHQRKKHQDMLPTAQKQPRQVAKIVGQQIVHQQPQSPGIPEDGKLMNSPDIPETAVGPTVLTDDVMHEVSDDHLSVFTNNSYMHCDDTKIGLTANTIKQNYKLAEESLLNQAVEDFEECRGPNGQYYRLIQMSSGHLMNQSEESIDDPPEPSRLYRLLTANGPFQPCPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226080;
90% Identity: iTF_00769081;
80% Identity: -