Dqua032038.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- prdm10
- Assembly
- GCA_963989225.1
- Location
- OZ022329.1:1235289-1245047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2e-05 0.0037 19.5 0.2 2 23 559 580 558 580 0.96 2 13 0.0059 1.1 11.8 2.2 3 23 605 625 603 625 0.97 3 13 0.002 0.37 13.2 0.1 2 23 656 677 655 677 0.96 4 13 0.0073 1.3 11.5 0.1 2 23 709 730 708 730 0.95 5 13 4.4e-05 0.0081 18.4 1.3 1 23 753 775 753 775 0.98 6 13 0.16 29 7.2 3.6 2 23 784 805 783 805 0.97 7 13 0.018 3.3 10.2 0.8 1 21 812 832 812 834 0.94 8 13 7.5e-05 0.014 17.7 2.6 1 23 840 863 840 863 0.97 9 13 2.4e-05 0.0044 19.3 0.6 3 23 870 890 869 890 0.99 10 13 2.1e-06 0.00039 22.6 2.4 1 23 896 919 896 919 0.95 11 13 0.011 1.9 11.0 1.9 1 23 960 983 960 983 0.97 12 13 0.00011 0.021 17.2 2.3 1 23 1005 1028 1005 1028 0.97 13 13 0.0053 0.97 11.9 5.5 1 23 1066 1089 1066 1089 0.97
Sequence Information
- Coding Sequence
- atggaCAACACGGTTGGTTCTGTAGCTGACGAGGGAGAAATTTCTTCTTTTGCTGCAAATGGTAACTGGGCAACAACTCAGTCAGGAACTAATCCATCAAATTCCACACTTTTGTTCATTGCGGTCGAATATGTTAAAGAAAATGCTTCAGCCGACTACAAATTCGAAACTGATGCATCATTTTCACCACAGCCTTCCACCTATAATTCAGAATTCGACCAACATGTTTCCCCCCTAGATCCAAATATGAGTTCCACTGCCCGTTATTCTCCTGTTTATTCGGAAGAGCCGGTTTCGACCACTAGTGATGCTTctacaggttacagtacacctGTAGTAGTCCCACTAATGTCGACCGAATTAGAAGGAGCTGCACCATCTTCAGGAGATTCTTGTTTTCAAGATATAGCGGATGCTGATACTCAGCTTTTGAGGCAAGTTGTCGGGAGTAGATATTTGCAAATGGTTGCTGCTTCGGGACAAATTGAAGGAGCCGATGGCGAGGAAAGCACATCAGttaatattgattataatcAGAGtaGATCTCCAGAAGTAGACGaccaaattataaataaagaattacaATTAGTACAATTTCCAATTAATAATTATCAACAACAATTAAAAGTTGATCCGGATCAAGTTGAATTGTTAATCACTGATCAAAATACAGGAATTTCTTACAGTTATGTGTCTCAAGATTTTTTGGTAAGTCGCACCCCGTTACCAAATTTACCGGAAGACGAGCAGCAATTGAATAATGTTTTAAATACTTTGGAATCACATGGACTTGTCATGGAAACAAATGATGACGAAGTTACTGCTCAGAATTCTGGATTAACAATTTCTGATGGTCAAATGATGCTGCAAGATCCTCTTTTGGGGTCTGACCTTCTTTTACAAGCACCTGTAGAAATAACGCTGGATGATAACGTCCTTTCTGCACCAAATACTCTAGTTTTAAAGCCTGAACTTCCGCCTCCAAATCAGCTTATTTCATCGGAAGTACTCAGTGCTCCTTCAAGCATTGAACAAGAGGCAGCCGAACTTATAtccaaaaatgttaaaaaagaAGATTTTGATGAAGTTGATGTCAAGACAGAATTTGAAGCGCAACAACTCCGGCGATCTAGAAGGCAGAATGAGCGACAAACTCTCGATGAAGACATAAATTTATtgaATCGTGTCCAAACTATCAGCGATAAACCAGTGCCGTCTCGAGCAAGGGCAACTTTACCTGAACCTTATTTGGTTATCAACAAACTGCCTTCTTCGCCTGATGTAAAACCAGaatATGGAGTGTTTGCCAGAAAGGCAATACCAAAACGCACGCAATTTGGTCCAATCGAAGGAATACTTTTAGACGCACCTATAATCAATCATCTACATGATGATTCAAACGAATTAAAACTTTTACTTGAATCTGAAACTGGAAGTATGCACAAGTTGGACATTTCAGATGAAAATTCTTCAAATTGGATGAGATTTGTACGAAGAgcgaaaaattttaatgaacaaaatttgattttgagtCAGCAGGGGTATTCTTTGTATTTTACTACGACCAGAGCTATTTTACCGAGACAAGAATTACaggtTGGATATTGTTCTACGTATGCAGCCAAACGCAAATTACCAACATTGCAGCCTGTATCAGAAGATGAACATAATTGGCCGTGCTTCGAATGCCCTCTTAAATTTACCACTTCGGATGATTTGCAGAAACATCTTAATGTTCATGACGAAAATAAggaggaaacaataaaaaatcgtGTTAAAAAATTGGGCCGATTTAAGCGGCGCCCATTTGGCTGTCCTCACTGCTCCAGAACTTTTTTGCGTCGTGTAAGTCTAAACAGGCATCTTTTACAACACAACAATCCGGTAGCGTTTCGTGAAAGACAGAATCGTTACATACGACGAAACAATATTTCTCCTGATAAAATTGAcaaaaatttagaatgGAAATGTGGTATTTGTTCGTTGCACTTTCCAACACCATCTTTGTTGAATTTACACGAATTGattcataaaaatgaaaattctgaaATGATAACTGGATTGCCGCTTGATTTGGGGTCTGGTTGCAATGAGGGCGAATTTTTGGTGCACAGTGGCGCTGTACAGTGCCCTCAATGCAGTATTGAATACACAAATCGGAAATCTTTAATTGAACATGTTTCGGAGCATGGTAAAAGGCAAccgaatgaaataaatgaattagtTGATTTGCGACCGgaacaaacaaaaaaaggaTTTAAATGCTATTTGTGCTACAAAGCTTTTGCATCCAAAGAACGACTTCAGcgTCACATGTTAGTCCACGGCTCTGAAGATTCTAAGCCAATCAAATGTGATACTTGTTCTAaacgatttttgaataattctgcTTTAACTTGCCATTTAAAAACTCATAAACTGGACAAAAAGATATTTGAATGTCCAATTTGTAAAATTTCTTTCGACCAAATCTTACTTCTTAAGGAACACGTTAGATGTCATTGTATTGATGGAATTTACACTTGTCCACATTGCAATAAGattttcaaGGAATACAGCATGATTCGTAAACACATTCGAGCTTTCCACTGCGAAAGAAAACACGGTTGCCAATACTGTGGCAAACCTTTTTCAACTTTAGATAAATTACGTATGCATTTGTTGAAGCACAGCGACCACCGTGAATTTTTATGCTCTGAATGTGGAAAACAATTCAAACGCAAAGATAAACTCAAGGAACATATGAAAAGGATGCACTCGGGTGATGGCCGGGAACTCTCAGCGAGATTTAACGCTGCTAAAGGGAAGAATAATTCGGCAAatagtgtcaaaaaatttatgccaAAGGTGCAACCAACAGATTATCACCGATTCATCTATAAATGCCATAGCTGTTTATTAGGATTTAAACGTCGAGGAATGTTGGTGAATCATTTAGCTAAACGGCACCCTGATATCAGCCCCGATTCAGTTCCTGAACTGAACCTCCCAATTTTAAAAACAACCCGCGATTATTACTGCCAATATTGTGACAAAGTCTACAAAAGCAGCTCAAAACGGAAAgcacatattttaaaaaaccaTCCAGGGTTGGAGCTTCCGATGTCTAATCGTCGTAAAGGGGGGTACCCTGATATTCCAGGGGTGCCAAACCCTACATTTTCACAAACTGTAGGAAGCGTGACAACTAATCCACATTCATGTCAGTGGTGCCACAAACAGTATGCTTCTAAAGCTAAATTATTGCAGCATCAGAGAAAGAAGCACCAGGATATGTTGCCAATTACGCAAAAACAACCCAGACAAGTCACTAAATTGGACAGTCAGCAAATGATGATGCAGCAGCAGCAGCCGCAGTCaccaaataTTCCTGAGGagggtaaattcatgaattcccCTGACGTTCCGGACTCAGCAGTTAGTTCAACAGTCCTTACTGAAGAAATTCAAGAAGTTTCAGAAGAGCAATTGAATGCTTTTACTTCAAATGGTTATCTGCAGTGTGACGACGTCAAAGTGGCCCTTACTGCTAATAACATAAAGCAAACTTATAAGTTGGCTGAGGAATCGCTGCTTAATCAGACAATGGAAGATTTCGAAGATTGTCGCGGGCCGAATGGTCAATACTACCGCTTAATTCAAATGTCGTCAGGTCAACTAATTGGCCAATCAGAGGAATCTGTCGACGATCCACCAGAACCAAGTCGTTTATACCGTCTTCTTACAGCCAACGGTCCTTTTCCTCCATATCCACCGCGTTGA
- Protein Sequence
- MDNTVGSVADEGEISSFAANGNWATTQSGTNPSNSTLLFIAVEYVKENASADYKFETDASFSPQPSTYNSEFDQHVSPLDPNMSSTARYSPVYSEEPVSTTSDASTGYSTPVVVPLMSTELEGAAPSSGDSCFQDIADADTQLLRQVVGSRYLQMVAASGQIEGADGEESTSVNIDYNQSRSPEVDDQIINKELQLVQFPINNYQQQLKVDPDQVELLITDQNTGISYSYVSQDFLVSRTPLPNLPEDEQQLNNVLNTLESHGLVMETNDDEVTAQNSGLTISDGQMMLQDPLLGSDLLLQAPVEITLDDNVLSAPNTLVLKPELPPPNQLISSEVLSAPSSIEQEAAELISKNVKKEDFDEVDVKTEFEAQQLRRSRRQNERQTLDEDINLLNRVQTISDKPVPSRARATLPEPYLVINKLPSSPDVKPEYGVFARKAIPKRTQFGPIEGILLDAPIINHLHDDSNELKLLLESETGSMHKLDISDENSSNWMRFVRRAKNFNEQNLILSQQGYSLYFTTTRAILPRQELQVGYCSTYAAKRKLPTLQPVSEDEHNWPCFECPLKFTTSDDLQKHLNVHDENKEETIKNRVKKLGRFKRRPFGCPHCSRTFLRRVSLNRHLLQHNNPVAFRERQNRYIRRNNISPDKIDKNLEWKCGICSLHFPTPSLLNLHELIHKNENSEMITGLPLDLGSGCNEGEFLVHSGAVQCPQCSIEYTNRKSLIEHVSEHGKRQPNEINELVDLRPEQTKKGFKCYLCYKAFASKERLQRHMLVHGSEDSKPIKCDTCSKRFLNNSALTCHLKTHKLDKKIFECPICKISFDQILLLKEHVRCHCIDGIYTCPHCNKIFKEYSMIRKHIRAFHCERKHGCQYCGKPFSTLDKLRMHLLKHSDHREFLCSECGKQFKRKDKLKEHMKRMHSGDGRELSARFNAAKGKNNSANSVKKFMPKVQPTDYHRFIYKCHSCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGLELPMSNRRKGGYPDIPGVPNPTFSQTVGSVTTNPHSCQWCHKQYASKAKLLQHQRKKHQDMLPITQKQPRQVTKLDSQQMMMQQQQPQSPNIPEEGKFMNSPDVPDSAVSSTVLTEEIQEVSEEQLNAFTSNGYLQCDDVKVALTANNIKQTYKLAEESLLNQTMEDFEDCRGPNGQYYRLIQMSSGQLIGQSEESVDDPPEPSRLYRLLTANGPFPPYPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01226080;
- 90% Identity
- -
- 80% Identity
- -