Pper030896.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:153178653-153182670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.9 9.6e+02 2.3 0.1 2 12 20 30 19 32 0.88 2 13 0.024 5.8 9.2 0.2 1 23 326 349 326 349 0.90 3 13 0.092 23 7.4 1.5 1 23 358 380 358 380 0.98 4 13 0.00013 0.031 16.4 4.2 1 23 387 409 387 409 0.98 5 13 5.5e-06 0.0014 20.6 0.8 1 23 415 437 415 437 0.99 6 13 9e-05 0.022 16.8 1.1 1 23 444 466 444 466 0.97 7 13 3.4e-05 0.0086 18.1 0.4 1 23 472 494 472 494 0.97 8 13 7.2e-05 0.018 17.1 0.3 1 23 500 522 500 522 0.98 9 13 4.3e-05 0.011 17.8 0.8 1 23 528 551 528 551 0.95 10 13 6.3e-05 0.016 17.3 3.8 1 23 557 580 557 580 0.97 11 13 1.5e-05 0.0038 19.3 3.5 1 23 586 608 586 608 0.98 12 13 0.00033 0.083 15.0 0.4 1 23 614 636 614 636 0.96 13 13 0.00087 0.22 13.7 0.9 1 22 642 663 642 666 0.92
Sequence Information
- Coding Sequence
- ATGACCGAAATCATTGACCGAATTGTTACAAATTATACGACTACAACAGAATTCCTCAAATGCTTCCTCTGTGATCGAATATTCGCCGATGGCGATGAACCGTGGCATCTATTCGAGAAAAGGCTTCTTGAAAATGGTCAAACAGACAGTCCCCTATCGGCAATCCTATCATCTGCACTGGGAAAGGAGCTCGAACAGGATACAGTACACTCTAAGttGCTTTGCGATGAGTGCAATTTCATACTTCTAGAGTACGAGAGCATAGAGAAGCGATTTTATCAGTTCCGGTTGAAAATACTATCCGATTACAATAACACGGCAAAAGAAAATGGACTCGATCCGATTTGGTTCGAAATAGGAGATGTAGAGGAGTGCGCCCAGATTCATGAGGAACCCATTGTTGGGAATGATGCCATATTGGATGAGGAAGTAGTTAAAACTGAACGTGAAGTTGAAGAGAGAATTGTCGATCATATTCCTATACTGGATAATCAAGAAATTGCTGGTTATGTGGTGGAGGACGTCCAGGAGCAGTATCACGAGAATGTAATTCAAGAATTCAATACAGAAACAGTAGCTGTGATTAATAGTGAGGCGCAGGAAAACGAGGAGGAAAGCAATGCGTATGCCGAAAGGAATATTCAAGTTATGAGCGAAGaaataacCTATGAACAAATCATTGAGCAAAATTCCGAAATAAGCTACGATAACAGCATGGATGCTGCTGAATCGGCGATTGACTACAATAGCAGCAGCAATGATGATAAATCACCAATAATTCCCGATGACATCCCGAAGCCAGCAAAGCAGAAACGTTCAGCGCGTGCAGTAAAACGTGAACAGCAGCGAGAAACCGAGGCTATTGAGTTTGAATTCACTGGCATCATGTATATTTGCGCGTTATGTCCTGATAAAACCGAATATGAACCGATGTTGTTTGCGAATCACTTGAAAAACATGCACAACTATAAGTACTACGTGTGTGATATCTGCTACAAAGGGTTTAATAAACGCGGGGAAAGCAATGATCATATGGATGAGGCGCACGCTGGCGGAGCAGAAGAGGGCGAGTTCCAATGTGAAACCTGTCTAAGGGTATTTTTAAATCTTCGCCTGTTTCGTATCCACAAACGATTGCACTATACTTCAACCAAGCAACATGAATGCTCTGAGTGTCACAAGAAGTACAGCTCGAAGAATCTTCTCGATGAGCACATGAATATGCACACGGGTAAGAGGCCCTACAAGTGTGCGTCGTGTAGTAAGGATTTCGCCTCGAAATATACGCTGCAAGCTCATATGAAGATACATACGAAGCGACCAAGACCATATAGTTGTGATGAGTGCGACAAATCTTTTTTGAATCAGCAGAACCTGGTGCAGCACAAGAAACTACATTCGGGACTCAAGTCGTTTGTCTGTGAGATTTGTCAGAAGGCATTTGGTACTCAGCATAATTTGGATGTGCATAAGATAGTGCATTCGGGAAACAAGCCGTTTATATGCCGCACATGTGGCAAAGGCTTTGCACGTCGTGCTGAGATCAGAGATCACGAGAGGACACATACGGGCGAGAGACCTTTTAAGTGTGATTTGTGTTCAATGGCATTTGCCCAGCGATCGAACCTGATGACTCATAAGAAAGCCACGCATTTGAATGACAAGAAGCATAAGTGCACGCTATGTGATAGGTCGTTTAAGAGGAGGAGACTGCTGGAATACCATACGCAGTCAGCCCATACAGGCGAACGTCCACATAAGTGTGACGTGTGTAGTGCCACGTTTGTCTATCCGGAGCATTTCAAGAAGCATATGCGCATCCACAGCGGAGTGAAGCCATATGCGTGTGAGGTTTGCGGAAAGCTGTTCAATAGTAGGGACAACCGGAACGCGCATAGATTCATTCACAGCGAGAAGAAGCCTTATGAGTGTCTGGAGTGTGGAATGGGTTTCATGCGAAAGCCATTGTTGTTATCGCACATGAAACATACGAAGCATGTGAATGACACAATTATTGTGAATCAACCGCAAATAAGTCACAAAGGAATCGAAGAAGTGGATAAGGAGTTAAGCGATGAAGAACTTGTATTGAATAGTCGAAATGCTTCCGAGTGCATCGTTGGTGGAGCGGCATACGATGAAGTTATCACATCCGACACAATACTAGTTGAAGACGGCGATGGGAGGTATATAAAAGATGAAGATggagaagtaaaatatttgcagTTTACCGAGATGGGTAAAGATGGACAAGCAACGTTCACCTGGGTGGATATAGGCGAGGATAAGGAGGATGACAATTAG
- Protein Sequence
- MTEIIDRIVTNYTTTTEFLKCFLCDRIFADGDEPWHLFEKRLLENGQTDSPLSAILSSALGKELEQDTVHSKLLCDECNFILLEYESIEKRFYQFRLKILSDYNNTAKENGLDPIWFEIGDVEECAQIHEEPIVGNDAILDEEVVKTEREVEERIVDHIPILDNQEIAGYVVEDVQEQYHENVIQEFNTETVAVINSEAQENEEESNAYAERNIQVMSEEITYEQIIEQNSEISYDNSMDAAESAIDYNSSSNDDKSPIIPDDIPKPAKQKRSARAVKREQQRETEAIEFEFTGIMYICALCPDKTEYEPMLFANHLKNMHNYKYYVCDICYKGFNKRGESNDHMDEAHAGGAEEGEFQCETCLRVFLNLRLFRIHKRLHYTSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCASCSKDFASKYTLQAHMKIHTKRPRPYSCDECDKSFLNQQNLVQHKKLHSGLKSFVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCSMAFAQRSNLMTHKKATHLNDKKHKCTLCDRSFKRRRLLEYHTQSAHTGERPHKCDVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGIEEVDKELSDEELVLNSRNASECIVGGAAYDEVITSDTILVEDGDGRYIKDEDGEVKYLQFTEMGKDGQATFTWVDIGEDKEDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00310466; iTF_00389821; iTF_00312866; iTF_00313701; iTF_00241003; iTF_01541619; iTF_01542402; iTF_01522038; iTF_01521341; iTF_01522838;
- 90% Identity
- -
- 80% Identity
- -