Bscu048254.1
Basic Information
- Insect
- Brachyopa scutellaris
- Gene Symbol
- -
- Assembly
- GCA_949775065.1
- Location
- OX459115.1:91672766-91675284[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.98 2.3e+02 4.1 0.3 1 12 16 27 16 29 0.91 2 13 0.004 0.94 11.6 0.2 1 23 322 345 322 345 0.93 3 13 0.081 19 7.5 4.4 1 23 354 376 354 376 0.99 4 13 2.3e-05 0.0055 18.6 3.2 1 23 383 405 383 405 0.98 5 13 3e-05 0.007 18.3 1.1 1 23 411 433 411 433 0.99 6 13 0.00025 0.058 15.4 1.8 1 23 440 462 440 462 0.97 7 13 3.3e-05 0.0078 18.2 0.4 1 23 468 490 468 490 0.97 8 13 7e-05 0.016 17.1 0.3 1 23 496 518 496 518 0.98 9 13 7.1e-05 0.017 17.1 0.2 1 23 524 547 524 547 0.94 10 13 5.4e-05 0.013 17.5 2.5 1 23 553 576 553 576 0.96 11 13 1.4e-05 0.0033 19.3 3.5 1 23 582 604 582 604 0.98 12 13 0.00032 0.076 15.1 0.4 1 23 610 632 610 632 0.96 13 13 0.00084 0.2 13.7 0.9 1 22 638 659 638 662 0.92
Sequence Information
- Coding Sequence
- ATGACGGAAATTGTTGACCGAATCACAAATTATACAACTGAATTCTTTAAATGCTTCCTCTGCGATCGAATATTCGCTGATGGCGACGAACCATGGCACATGTTTGAGAAGAGGCTTCTTGAAAATGGACAAACAGATTGTTCACTTTCTGCGATTCTGTCATCAGCATTGGGAAAGGATATCGATCAGGATACTGTTCATTCTAagTTACTTTGCGATGAGTGCAATTTCATTCTTCTTGAATACGAGGGTATAGAGAAGAAATTCTATCAGTTTCGATTGAAAATCTTAACAGACTATAATAACACCGCCAAAGAGAATGGCCTCGATCCAATTTGGTTCGAGATAGGTGATGCGGAGGAATGTACCCAAACGGAGCCGCCATCCGTTAAAAATGGGAATGTATTGAACGTAGAAGAAGTGAAAACTGAACGTTATGTGGGAGATGCGATTGTTGAGCAGAATATTCCCATTTCGGATAATCATGATATTCGAACATTTATAGTCGAGGAAGTGCAGGAGCAGTATCAAGAGAGTATTGTTCAAGACTTCAGTACAGAGACAACAGCAGTGATAGATAACGAAAATGCTCAGGAGGAAGACGATAGCAGCATGTATGCTGAGAGGAATATTCAAGTTATGGCTGAAgAAATCACCTACGAGCAAATTATTGAGCAAAATTCCGATATAAGTTACGATAACAGTGTGAATGCTGCCGAATCTGTGATAGACTACAACAGTAGCAACGACGATACTTCCCCCATAATTCCAGATGATTCCCCGAAGCCACAAAAGCAGAAACGTTCAGGGCGTTCAATAAAACGCGAGCAGCTGGGAGAAACGGAAAGTAGTGCTTATGAATTCAGcaataatatgtatacatgCGCTTTGTGTCCCGAGAGACCCGAATTCGAACCGATGTTGTTCCCAAATCATTTGAAACTTGTGCACAACTACAAGTTCTACGTATGTGACGTCTGTTTCAAAGGCTTTAGTAAACGCAACGAAATCAGTGATCACATGGACGAGGAGCACGGCGGCGGAACAGAACAAGGCGAATTTCAGTGTGAGACCTGCCTACGGGTGTTCTTAAATCATCGTCAGTTTCGTATTCACAAACGAATGCACTATAGTTCAACGAAGCAACACGAATGCCCCGAGTGCCACAAGAAGTACAGTTCGAAGAACCTACTTGACGAACATATGAATATGCACACGGGTAAACGGCCCTACAAGTGTTTGTCGTGCAGTAAGGATTTTGCATCAAAATATACACTGCAGGCTCACTTGAAAATACACACGAAAAGACCCAGACCGTACAATTGCGATAAGTGTGACAAATCATTTTTGAATCAACAGAATCTGGTGCAGCACAAGAAGTTGCATTCGGGGCTGAAGTCGTTTGTGTGTGAGATTTGTCAGAAGGCTTTTGGTACACAGCACAACTTGGATGTCCATAAGATCGTCCATTCGGGAAACAAGCCGTTCATCTGTCGCACATGTGGCAAGGGCTTCGCGCGTCGTGCAGAGATTAGAGATCACGAGCGTACGCACACAGGCGAGCGGCCCTTCGCATGTGATTTGTGTCCAATGGCATTCGCCCAGCGGTCTAATCTCATGACGCATAAAAAAGCAACGCATTTGAACGATAAAAAGCATAAGTGTGCGGTGTGTGATAGGTCATTTAAGAGGAGGCGGCTGCTGGAGTATCACACGCAGTCGGCGCATACTGGTGAACGTCCACACAAGTGTGAAGTGTGTAGTGCCACGTTTGTTTATCCCGAGCATTTCAAGAAGCATATGCGCATCCACAGCGGAGTAAAACCGTACGCGTGTGAGGTTTGCGGAAAGCTGTTTAACAGCAGAGACAACCGAAACGCACATAGATTCATTCACAGCGAGAAAAAGCCGTACGAGTGTCTGGAGTGTGGAATGGGTTTCATGCGAAAGCCGTTGCTGTTGTCACACATGAAACACACAAAGCATGTAAATGATACAATCATCGTTAATCAGCCTCAAATCAGTCACAAAGGAGTGGAAGAAATTAGCAAGAAACTGTCGGCTGAAGATCTGGACTTGGATAGTCAAGATATTGGAGAATGTGTCGTAGGTGGAGCCATATACGATGAGGTTGTTACCTCGGACACGATACTAGTGGAAGATGGCGACGGGCAGTATATCAAGGATGAAGATGGAGAAGTGAAATATTTGCAATTTACTGAGATGGATAAAGATGGACAGGCGACGTTTACCTGGGTGGATATCGGTGAAGACAGAGAAGATAATTAG
- Protein Sequence
- MTEIVDRITNYTTEFFKCFLCDRIFADGDEPWHMFEKRLLENGQTDCSLSAILSSALGKDIDQDTVHSKLLCDECNFILLEYEGIEKKFYQFRLKILTDYNNTAKENGLDPIWFEIGDAEECTQTEPPSVKNGNVLNVEEVKTERYVGDAIVEQNIPISDNHDIRTFIVEEVQEQYQESIVQDFSTETTAVIDNENAQEEDDSSMYAERNIQVMAEEITYEQIIEQNSDISYDNSVNAAESVIDYNSSNDDTSPIIPDDSPKPQKQKRSGRSIKREQLGETESSAYEFSNNMYTCALCPERPEFEPMLFPNHLKLVHNYKFYVCDVCFKGFSKRNEISDHMDEEHGGGTEQGEFQCETCLRVFLNHRQFRIHKRMHYSSTKQHECPECHKKYSSKNLLDEHMNMHTGKRPYKCLSCSKDFASKYTLQAHLKIHTKRPRPYNCDKCDKSFLNQQNLVQHKKLHSGLKSFVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFACDLCPMAFAQRSNLMTHKKATHLNDKKHKCAVCDRSFKRRRLLEYHTQSAHTGERPHKCEVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGVEEISKKLSAEDLDLDSQDIGECVVGGAIYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFTEMDKDGQATFTWVDIGEDREDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223657;
- 90% Identity
- -
- 80% Identity
- -