Vbom034554.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422141.1:6496506-6499031[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 1.5e+03 2.3 0.1 2 12 17 27 16 29 0.88 2 13 0.0031 1.3 11.9 0.1 1 23 318 341 318 341 0.93 3 13 0.17 74 6.4 4.2 1 23 350 372 350 372 0.98 4 13 0.00012 0.05 16.4 4.2 1 23 379 401 379 401 0.98 5 13 2.6e-06 0.0011 21.6 0.5 1 23 407 429 407 429 0.99 6 13 0.00012 0.05 16.4 1.2 1 23 436 458 436 458 0.97 7 13 3.2e-05 0.014 18.2 0.4 1 23 464 486 464 486 0.97 8 13 6.7e-05 0.029 17.2 0.3 1 23 492 514 492 514 0.98 9 13 1.6e-05 0.0067 19.1 0.5 1 23 520 543 520 543 0.95 10 13 4.4e-05 0.019 17.7 3.1 1 23 549 572 549 572 0.97 11 13 1.4e-05 0.0061 19.3 3.5 1 23 578 600 578 600 0.98 12 13 8.8e-05 0.037 16.8 1.5 1 23 606 628 606 628 0.96 13 13 0.00045 0.19 14.6 0.6 1 22 634 655 634 658 0.92
Sequence Information
- Coding Sequence
- ATGACGGAAATCGTCGAGCAAATTCCAGACTTCACAACAGAGTATTTGAAGTGCTTCCTTTGCGATCGGATATTCGCAGACGGCGACGAACCGTGGCACATGTTCGAGAAAAGGCTCCTTGAGAATGGTCAGACGGACTGCCAGTTGTCGGTGGTTCTATCATCAGCACTGGGGAAGGTCCTTGAACAGGATAGCGTGCACTCAAAGCTGCTTTGTGATGAATGCAACTCGGTGGTGCTGGAATACGAGAGTATAGAGAAGCGATTCTATCAGTTTCGCTTGAAAATCCTCACAGACTACAACAACACGGCCAAAGTGAATGGACTTGACCCAGTTTTGTTTGAGATTGGGGACGTGGAAGACTCCCAGATTCATCAGGAGCCAATCGAAGAAACAGAAAGCATAGTGAACGTAGAGGAGATCAAAACCGAAAGTAGTGTGGTGGAGGAGAGAATTGTTGGGCAGATCTCGAAAATCGAACATCAGGAGATTGGTGGTTACGTGGTAGAAGAGGTGCCAGAAGCGGAGCAATACCACGAGAACATTGTGCAGGTGTTTAACCCGGAGACAGGCACTGTGATTGACACTACAGTGCAGGAGGAGATAGATGCGAGTAGCGCGTACGAGCGGAATATCCAGGTCATGGCTGAAGAAATAACTTACGAGCAAATCATTGAGCAGAACTCGGTCATAAGTTACGACAACAGCGCTGATGCTGGCGACTCGGCGATTGAATATAACAGCAGCAATGAAGATCAAATGCCAACCGTCCCAGATGACACCCCAACCACCAAACAAAAACGCTCAGGCCGTTCGGTCAAGCGAGAGGCCGAGGCCATTGGCTTCGAATTCATCGAcaacatgtacatatgtgcgTTGTGCCCCGAGAAGCCCGAGTACGAGCCAATGTTGTTCTCCAATCACTTGAAAAACGTGCACAACTACAAGTTTTACATCTGCGACATTTGTTACAAGGGTTTCAACAAGCGAAACGAGATCAACGATCACATGGACGAGGCCCATGAGGGTGGAGCAGAGGAGGGCGAGTTCCAGTGTGAAACCTGCCTGAGGGTGTTCCTAAACCATCGTCAGTTTCGTATCCACAAGCGCCTCCACTACAGCTCAGCCAAGCAACACGAATGCTCAGAATGCCACAAGAAGTACAGTTCAAAGAATCTACTCGACGAGCATATGAACATGCACACGGGCCGACGGCCGTATAAGTGCGTATCATGTGGAAAGGATTTCGCCTCGAAATACACTCTGCAGGCTCATCTGAAAATTCATACGAAGCGACCACGACCATTCAGCTGCGACGAGTGCGACAAGTCATTCTTAAATCAACAGAACTTGGTGCAGCACAAGAAGCTGCACTCGGGTCTGAAATCGTTTGTCTGTGAGATATGTCAGAAGGCCTTTGGCACGCAGCACAACTTGGACGTCCACAAGATAGTGCACTCGGGTAACAAACCGTTCATCTGTCGTACGTGCGGTAAAGGCTTTGCGCGTCGTGCTGAAATAAGGGACCACGAGCGAACGCACACCGGCGAGAGACCATTCAAATGCGATCTGTGCCCGATGGCTTTTGCGCAGAGATCGAACCTCATGACGCACAAGAAGGCCACCCACTTGAATGACAAGAAACACAAGTGCGAACTGTGTGACAGGTCGTTTAAGAGACGACGATTGTTGGAGTACCACACACAGTCAGCGCATACAGGAGAACGTCCACACAAATGCGACGTCTGCAGTGCAACGTTTGTGTATCCGGAGCACTTCAAGAAACATATGCGTATCCACAGCGGAGTTAAACCGTATGCGTGCGAAGTTTGTGGCAAACATTTCAATAGCAGAGATAACCGCAACGCTCACCGATTCATTCACAGCGAGAAAAAGCCGTACGAGTGCTTGGAGTGCGGAATGGGATTTATGCGGAAACCGTTATTACTAGCACATATGAAACACACCAAACATGTGAACGATACAATCATTGTGAATCAACCACAGATAAGCCACAAGGAGGtgaaagaaatcgaaaaagaccTCACCGACGAGGAGTTAGAGTTAAACACTCGAACTATGACGGAATGTGTTGTTTCGGGATCCGCATACGATGAGGTGGTCACTTCGGACACAATTCTGGTCGAAGATGGAGATGGCCAGTACATCAAAGATGAGGATGGAGAAGTGAAATATTTGCAGTTCACTCAGATGGACAAAGATGGACAGGCGACGTTTACGTGGGTACATATCGGAGATGAAGACAAGGAAGATGAATAG
- Protein Sequence
- MTEIVEQIPDFTTEYLKCFLCDRIFADGDEPWHMFEKRLLENGQTDCQLSVVLSSALGKVLEQDSVHSKLLCDECNSVVLEYESIEKRFYQFRLKILTDYNNTAKVNGLDPVLFEIGDVEDSQIHQEPIEETESIVNVEEIKTESSVVEERIVGQISKIEHQEIGGYVVEEVPEAEQYHENIVQVFNPETGTVIDTTVQEEIDASSAYERNIQVMAEEITYEQIIEQNSVISYDNSADAGDSAIEYNSSNEDQMPTVPDDTPTTKQKRSGRSVKREAEAIGFEFIDNMYICALCPEKPEYEPMLFSNHLKNVHNYKFYICDICYKGFNKRNEINDHMDEAHEGGAEEGEFQCETCLRVFLNHRQFRIHKRLHYSSAKQHECSECHKKYSSKNLLDEHMNMHTGRRPYKCVSCGKDFASKYTLQAHLKIHTKRPRPFSCDECDKSFLNQQNLVQHKKLHSGLKSFVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCPMAFAQRSNLMTHKKATHLNDKKHKCELCDRSFKRRRLLEYHTQSAHTGERPHKCDVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKHFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLAHMKHTKHVNDTIIVNQPQISHKEVKEIEKDLTDEELELNTRTMTECVVSGSAYDEVVTSDTILVEDGDGQYIKDEDGEVKYLQFTQMDKDGQATFTWVHIGDEDKEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223657;
- 90% Identity
- iTF_01522038; iTF_01522838;
- 80% Identity
- -