Basic Information

Insect: Xylota sylvarum
Gene Symbol: -
Assembly: GCA_905220385.1
Location: LR999957.1:105648891-105651919[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1 1.3e+02 3.9 0.1 2 12 18 28 17 31 0.87

2 13 0.0079 0.95 10.6 0.2 1 23 318 341 318 341 0.94

3 13 0.085 10 7.4 1.5 1 23 350 372 350 372 0.98

4 13 0.00012 0.014 16.4 4.2 1 23 379 401 379 401 0.98

5 13 5.2e-06 0.00062 20.7 0.8 1 23 407 429 407 429 0.99

6 13 0.00034 0.041 14.9 1.2 1 23 436 458 436 458 0.97

7 13 3.2e-05 0.0039 18.2 0.4 1 23 464 486 464 486 0.97

8 13 6.7e-05 0.0081 17.2 0.3 1 23 492 514 492 514 0.98

9 13 4e-05 0.0048 17.9 0.8 1 23 520 543 520 543 0.95

10 13 5.9e-05 0.0071 17.3 3.8 1 23 549 572 549 572 0.97

11 13 1.4e-05 0.0017 19.3 3.5 1 23 578 600 578 600 0.98

12 13 0.00031 0.037 15.1 0.4 1 23 606 628 606 628 0.96

13 13 0.00081 0.097 13.8 0.9 1 22 634 655 634 658 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1	1.3e+02	3.9	0.1	2	12	18	28	17	31	0.87
2	13	0.0079	0.95	10.6	0.2	1	23	318	341	318	341	0.94
3	13	0.085	10	7.4	1.5	1	23	350	372	350	372	0.98
4	13	0.00012	0.014	16.4	4.2	1	23	379	401	379	401	0.98
5	13	5.2e-06	0.00062	20.7	0.8	1	23	407	429	407	429	0.99
6	13	0.00034	0.041	14.9	1.2	1	23	436	458	436	458	0.97
7	13	3.2e-05	0.0039	18.2	0.4	1	23	464	486	464	486	0.97
8	13	6.7e-05	0.0081	17.2	0.3	1	23	492	514	492	514	0.98
9	13	4e-05	0.0048	17.9	0.8	1	23	520	543	520	543	0.95
10	13	5.9e-05	0.0071	17.3	3.8	1	23	549	572	549	572	0.97
11	13	1.4e-05	0.0017	19.3	3.5	1	23	578	600	578	600	0.98
12	13	0.00031	0.037	15.1	0.4	1	23	606	628	606	628	0.96
13	13	0.00081	0.097	13.8	0.9	1	22	634	655	634	658	0.92

Sequence Information

Coding Sequence: ATGACGGAAATCGTCGgacaaataattacaaattattcGACAGAATTCCTTAAATGCTTTCTTTGTGATCGAATCTTTACAGACGTCGATGAGCCATGGCATATGTTCGAGAAAAGGGTCCTAGAAAACGGTCAAACAGATAGCCCACTATCAGCGATTCTATCATCTGCTCTGGGCAAGGAACTCGAACAAGATAGTGTACATTCCAAGTTGCTTTGCGATGAGTGCAATTTCATTCTTATCGAATATGAAAGTATAGAGAAGCGATTCTATCAGTTTCGGTTGAAAATACTATCGGACTACAATAATACAGCCAAAGAAAATGGTCTAGACCCGATTTGGTTTGAAATTGGGGATGTAGAGGAATGCGCCCAGAATCAGGAGGAACCTACTATTGACAATGAAAGCATTGTTGAGGAAGAAGTTAAAGTGAAGACTGAAGGTGAAATTGACCACATACCTATTCTGGACAATCAAGAAATTACCGGTTTTGTGATAGAGGACGTGTCGGAGCAATATCAAGAAAGTGTTGAGGAATTTAGTGAAGAAACAGCAGCTGTTATTACTAGTGAAGCGCAGGAAGAAGAGGAGAGCAGTGCATATGCTGAACGGAATATTCAAGTGATTAGTGAAGaaataaCGTATGAACAAATCATTGAGCAAAATTCGGTGATAAGCTACGATAACAGCGTGGATGCTGCAGAATCGGGAGTCGACTACAATAGCAGCAACAATGATGataatacAACGTTAATCCCCGATGACATCCCGCAGTCCacgaagcaaaaaaaatcaGGGCGTGCAGTAAAACGAGAACCGCATCGAGAAACGGAAAccattgaatttgaattcacCGGCGTCATGTACATTTGCGCATTGTGTCCTGAGAAGCCCGAATACGAGCCGATGTTGTTTGCGAATCATTTGAAAAACATGCATAATTACAAGTACTACGTGTGTGATATCTGTTACAAGGGATACAACAAACGTAATGAAATAAACGATCACATGGATGAGGTGCACGGCGGAGGTACGGAAGAAGGCGAGTTCCAGTGTGAAACCTGTCTGAGGGTGTTTTTAAATCTTCGCCTGTTTCGTATCCATAAACGACTGCACTACACTTCAACAAAACAGCATGAATGCTCTGAGTGCCACAAGAAGTATAGCTCGAAGAATCTCCTTGATGAACACATGAATATGCATACGGGTAAACGTCCCTATAAGTGTGCGTCGTGTAGTAAGGATTTCGCCTCGAAATATACGCTGCAAGCACACATGAAGATACATACAAAGAGGCCAAGGCCGTATAGTTGCGATGAATGCGAAAAGACTTTCTTGAATCAACAGAACCTGGTCCAGCACAAGAAGTTGCATTCGGGACTCAAGTCGTTTGTCTGTGAGATTTGTCAAAAGGCATTTGGCACTCAGCACAATTTGGATGTACATAAGATAGTGCATTCCGGTAATAAGCCATTTATTTGTCGCACTTGTGGCAAAGGCTTTGCTCGTCGTGCCGAGATTAGAGATCACGAACGAACACATACGGGCGAGAGACCATTCAAATGTGACTTGTGCTCAATGGCATTCGCCCAGCGATCGAATCTGATGACGCATAAGAAAGCAACGCATTTGAATGATAAGAAGCATAAGTGCACGCTATGTGATAGATCGTTTAAGAGGAGAAGGCTGTTAGAATACCATACGCAGTCGGCCCATACTGGAGAACGTCCACATAAGTGCGATGTTTGTAGTGCCACGTTTGTCTATCCGGAGCATTTCAAAAAACATATGCGTATCCATAGCGGAGTGAAGCCATATGCTTGTGAGGTTTGCGGAAAGCTGTTCAATAGCAGGGACAATCGAAATGCACATAGATTTATCCACAGCGAGAAGAAGCCATATGAGTGTTTGGAATGCGGAATGGGTTTCATGCGAAAACCATTACTATTATCGCACATGAAGCACACAAAACATGTGAATGATACAATTATTGTTAATCAACCGCAAATAAGTCACAAAGGTGTGGAAGAAGTCGACAAGGAGCTGACAGATGAAGAGCTGGGATTGAATAGCCGAAATGATTCGGAATGCATTGTGAGTGGGCCGACATACGATGAGGTTATAACGTCCGATACGATACTAGTTGAAGATGGCGATGGCCGTTATATAAAGGATGAAGACGGTGAGGTGAAATACTTGCAATTTACTGAGATGGGTAAAGATGGACAAGCAACGTTTACGTGGGTGGATATCGgcgaagacaaggacgatgataattag
Protein Sequence: MTEIVGQIITNYSTEFLKCFLCDRIFTDVDEPWHMFEKRVLENGQTDSPLSAILSSALGKELEQDSVHSKLLCDECNFILIEYESIEKRFYQFRLKILSDYNNTAKENGLDPIWFEIGDVEECAQNQEEPTIDNESIVEEEVKVKTEGEIDHIPILDNQEITGFVIEDVSEQYQESVEEFSEETAAVITSEAQEEEESSAYAERNIQVISEEITYEQIIEQNSVISYDNSVDAAESGVDYNSSNNDDNTTLIPDDIPQSTKQKKSGRAVKREPHRETETIEFEFTGVMYICALCPEKPEYEPMLFANHLKNMHNYKYYVCDICYKGYNKRNEINDHMDEVHGGGTEEGEFQCETCLRVFLNLRLFRIHKRLHYTSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCASCSKDFASKYTLQAHMKIHTKRPRPYSCDECEKTFLNQQNLVQHKKLHSGLKSFVCEICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCSMAFAQRSNLMTHKKATHLNDKKHKCTLCDRSFKRRRLLEYHTQSAHTGERPHKCDVCSATFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGVEEVDKELTDEELGLNSRNDSECIVSGPTYDEVITSDTILVEDGDGRYIKDEDGEVKYLQFTEMGKDGQATFTWVDIGEDKDDDN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223657;
90% Identity: iTF_01541619;
80% Identity: -