Cran016379.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:53804834-53808183[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.46 46 5.1 0.8 1 11 16 26 16 29 0.91 2 13 0.002 0.2 12.5 0.2 1 23 328 351 328 351 0.93 3 13 0.4 40 5.3 4.2 1 23 360 382 360 382 0.98 4 13 0.00012 0.012 16.4 4.2 1 23 389 411 389 411 0.98 5 13 3.9e-05 0.0039 17.9 1.1 1 23 417 439 417 439 0.99 6 13 8.4e-05 0.0084 16.8 1.1 1 23 446 468 446 468 0.97 7 13 3.3e-05 0.0033 18.1 0.4 1 23 474 496 474 496 0.97 8 13 6.7e-05 0.0067 17.1 0.3 1 23 502 524 502 524 0.98 9 13 1.7e-05 0.0017 19.0 0.3 1 23 530 553 530 553 0.95 10 13 5.9e-05 0.0058 17.3 3.8 1 23 559 582 559 582 0.97 11 13 1.1e-05 0.0011 19.6 3.3 1 23 588 610 588 610 0.98 12 13 0.00031 0.031 15.0 0.4 1 23 616 638 616 638 0.96 13 13 0.00081 0.081 13.7 0.9 1 22 644 665 644 668 0.92
Sequence Information
- Coding Sequence
- ATGACGGAAATCATCGACCGAATAACAAATTATACCACAGAattctttaaatgttttctttgtgaTCGAACATTCGAAGACGGTGATGAACCATGGCATATGTTTGAGAAAAGGCTTCTGGAAAACGGTCAAAGTGATTGCCCCTTGTCAGCTATTCTATCATCTGCACTGGGAAAGGAACTCGAACAGGATACCGTCCATTCTAAGCTACTTTGTGATGAGTGCAATTTAATTCTTGTGGAATACGAAAGTATAGAAAAGAGATTCTATCAGTTTCGGTTGAAAATTCTCTCTGATTATAATAATACGGCCAAAGAAAATGGATTGGATCCAATTTGGTTCGAGATAAGCGAAGTGGAAGAATGTGCTCAAGTTCATTCGCCAGCAGATGCAAATGATGAGGCGGTTTTGAATGTGgaagaaattaaaactgaaCGTGATGTCGAGGAAAGGGTTATTAATCATATACCTATTCTGGACGATCAGGAAATTCCCAATTATGAAGTCGAGGAAGCCCAGGATCAGTATGATGCGAGTATTGTTCAAGAATTCAACACAGATGTAGCGGCGGTGATTACTAGTGATGTTCAggaagatgaggaagaggaagaggagaatAGTTCATACGTTGATCCAGAACGTAATATTCAAGTTTTAGCTGAAGagaTTACCTATGAGCAAATCATTGAGCAAAACTCCGTCATAAGTTACGATAACAGCGTGGATGCTGTTGAATCCGCCATGGACTACAACAGCAGCATTGATGATGATAAAACGCAATTGATTCCGGATGATATACCAAAGCCAACGAAGCAGAAACGTTCAGTGCGTTCAATAAAACGGGAGCAGCAGCAAGAAACTGAAGCGATAGAGTTTGAATTCAATGGAAACATGTATATTTGTGCCCTGTGTCCAGAGAAAGCTGAATATGAACCGATGTTGTTCCCGAATCACTTGAAAAACATTCACAACTATAAGTACTACGTGTGCGATATTTGCTATAAGGGCTTTAGCAAACGAAATGAAATCAGCGATCACATGGATGAAGTGCACAGCGGCGGAGCTGAGGAAGGTGAATTCCAGTGTGAAACGTGTTTGCGGGTGTTTCTTAATCATCGTCTGTTTCGAATTCATAAACGACAGCACTATAGTTCAACAAAACAGCATGAGTGCTCGGAGTGTCACAAGAAGTACAGCTCGAAGAATCTGCTTGATGAACACATGAATATGCACACTGGTAAGCGTCCCTATAAGTGTATGTCATGTAACAAGGACTTTGCCTCGAAATATACTCTCAGTGCTCACTTGAAGATACATACGAAGCGACCGAGACCGTACAGTTGTGATGAATGTGACAAATCATTCTTGAACCAGCAGAATTTGGTGCAACATAAGAAGCTGCATTCGGGTCTGAAGTCCTTTGTCTGTGATATTTGTCAGAAGGCGTTTGGAACTCAACACAATTTGGACGTGCACAAGATAGTGCATTCGGGGAATAAGCCGTTTATATGTCGCACATGCGGCAAGGGCTTTGCACGTCGTGCTGAGATTCGAGATCACGAACGAACGCATACAGGTGAGAGGCCGTTTAAGTGTGATTTGTGTCCAATTGCATTTGCTCAGAGGTCGAACCTGATGACACACAAAAAAGCGACGCATTTAAATGACAAAAAGCATAAGTGCACGCTGTGTGATAGATCGTTTAAGCGGAGAAGGTTGTTAGAATATCACACGCAATCAGCGCATACCGGTGAGCGGCCACATAAATGCGAGGTATGCAGCGCATCGTTCGTCTATCCGGAGCATTTCAAGAAGCATATGCGTATCCATAGCGGGGTAAAGCCGTATGCGTGTGAGGTTTGTGGAAAGCTATTCAACAGCAGGGACAATAGAAACGCACATAGATTTATCCACAGCGAGAAGAAACCCTATGAGTGTTTGGAATGTGGAATGGGTTTCATGCGGAAGCCGCTATTACTGTCACACATGAAGCATACGAAGCATGTGAATGATACAATTATCGTAAATCAACCGCAGATAAGTCACAAGGGTGTGGAAAAAGTCGACAATGATTTGACCGACGAAGAGCTAGAAATGACGAGTCGAAATATATCAGAGTGCGTTGTGAATGGCGGATCTTACGACGAGGTTGTCACATCCGACACGATACTAGTGGAAGATGGCGATGCGCAGTACATTAAGGATGAAGATGGAGAAGTGAAATATTTGCAGTTCACCGAAATGGATAAAGACGGACAGGCGACGTTTACTTGGGTGGATATCGGTGAGGACAAGGAAGACGACAATTAG
- Protein Sequence
- MTEIIDRITNYTTEFFKCFLCDRTFEDGDEPWHMFEKRLLENGQSDCPLSAILSSALGKELEQDTVHSKLLCDECNLILVEYESIEKRFYQFRLKILSDYNNTAKENGLDPIWFEISEVEECAQVHSPADANDEAVLNVEEIKTERDVEERVINHIPILDDQEIPNYEVEEAQDQYDASIVQEFNTDVAAVITSDVQEDEEEEEENSSYVDPERNIQVLAEEITYEQIIEQNSVISYDNSVDAVESAMDYNSSIDDDKTQLIPDDIPKPTKQKRSVRSIKREQQQETEAIEFEFNGNMYICALCPEKAEYEPMLFPNHLKNIHNYKYYVCDICYKGFSKRNEISDHMDEVHSGGAEEGEFQCETCLRVFLNHRLFRIHKRQHYSSTKQHECSECHKKYSSKNLLDEHMNMHTGKRPYKCMSCNKDFASKYTLSAHLKIHTKRPRPYSCDECDKSFLNQQNLVQHKKLHSGLKSFVCDICQKAFGTQHNLDVHKIVHSGNKPFICRTCGKGFARRAEIRDHERTHTGERPFKCDLCPIAFAQRSNLMTHKKATHLNDKKHKCTLCDRSFKRRRLLEYHTQSAHTGERPHKCEVCSASFVYPEHFKKHMRIHSGVKPYACEVCGKLFNSRDNRNAHRFIHSEKKPYECLECGMGFMRKPLLLSHMKHTKHVNDTIIVNQPQISHKGVEKVDNDLTDEELEMTSRNISECVVNGGSYDEVVTSDTILVEDGDAQYIKDEDGEVKYLQFTEMDKDGQATFTWVDIGEDKEDDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223657;
- 90% Identity
- -
- 80% Identity
- -