Pnir042635.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- ZFX
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010005893.1:9310-16747[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 5.4e+02 3.2 0.1 3 23 33 53 32 53 0.94 2 15 3.1 1e+03 2.4 3.3 1 20 1032 1051 1032 1055 0.76 3 15 0.0023 0.73 12.2 1.7 3 23 1139 1160 1137 1160 0.96 4 15 0.0033 1 11.7 0.3 2 23 1173 1194 1173 1194 0.98 5 15 1.8e-05 0.0059 18.8 2.3 2 23 1197 1218 1196 1218 0.97 6 15 0.048 15 8.1 0.4 1 23 1224 1246 1224 1246 0.91 7 15 2.5e-05 0.0081 18.4 4.5 2 23 1253 1274 1252 1275 0.95 8 15 0.11 36 6.9 3.7 5 23 1288 1306 1287 1306 0.97 9 15 2.3e-05 0.0073 18.5 1.5 3 23 1313 1334 1312 1334 0.97 10 15 0.01 3.3 10.2 0.3 2 23 1350 1370 1349 1370 0.97 11 15 6.9e-05 0.022 17.0 0.7 1 20 1376 1395 1376 1398 0.92 12 15 8.6e-05 0.027 16.7 2.7 1 23 1406 1428 1406 1428 0.99 13 15 0.0024 0.77 12.2 3.2 1 23 1434 1456 1434 1456 0.97 14 15 4.4e-06 0.0014 20.8 3.9 1 23 1462 1484 1462 1484 0.99 15 15 0.00031 0.1 14.9 7.2 1 23 1490 1512 1490 1513 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCAGCACAGCTGTAAGTGCGATGTCAGCGGGAGCAGCCGGAGGTGGAGGCGGAGGCGGAggcggaggaggaggaggaggagcaGTGGCCTGCCCAGTGTGCACGTTGTACTTGCGCGAGGGCATCAGCTTACAAAAGCACTTGGACACTCATCCCAAGGAACAGGTCATCGAGGCGCTCATACGAGCTAGCAGCGGCGGAGGCAGCGCTTCGGCACTTCTCAGCCAAGCCTGCATGCCGCAGTCGCAACAACTCCAAGCACCGGTGACTGCCCCGACCCCGACACCGACCGCCGCGCCAACATTGCCATTGCCGACGCCGAGCACAAGCACCGGtgtgcagcagcagcagcagtcgaCTGCATCGTCGAGTCCACATGTTCCTCATGCTCAGTCGCCCTATCCAATTGGACCTATATTCGAGTGTCCACCTATCAACGCTATGATACCCCCGCCCCAGTTCGCTTCTTTTAGCTATCAgcagtttattaataatgGTACAATGATGATACCTGCGCAATATGCAATGGCTCAAGCGCAACCTCCCCAGACCAGCCAGATGATGCAGATGCTGTACAGTCCTTACGGTATGTACCATCAGCAACAGATTCCCACAGTTCAGATGATCTCGGCACCACCAATGATGCCCACTTCTTCGACGACGCTACCGACGACAGTGCCTGCGGTCACAACGCGCATAAGGCCGGCTGCGAATACGAGTAATGTCACACTAACGGCGATCAATGAGAAGATAGCGACAACGACATCGCCGCCGGCGCCACTTCCACCGCCACCGCCTTTAAGACCAACAACTTGCtcacagcagcaacagcaacagcagcagcaacaacagcagctcGTAGTTGAGACGCCTAAGCAGCACATAGTTCAAGAGATCTTACCTGGCCCCGATCGTATACTACCAGATTTAGAAATCCCAACAACGCCCGAGCCACCGCAAGCTGATGAAGAAGATGAGCAGAATAATGTACATGTGGAACATCGGGAgcaacaaattcaaaataagtgTATGCAGGAGGAACAACGGCATGTAATTGAACAATATCAAAGAGAAAATTCACCAACGCTGATCAGTAATTCTTGCAACAATAATACTGATGACGATAAGACTGAAAGGATCTTACCAGAAATTGAAGATGATAAAGAAATCGAATCATTGATTGTGCGGGAAACAGAAAAGgtagataattataaagaaattgaacTACAAGAATCTATTGGACAAGTCGAAAGTtcaataatgaaagaaaatacaaagaaagaaagtatagaaaatattcGTGCAAATGAAGTAGAAAATTGCaaaaagtttgaagaaaaaTCTGAAGGTAGTGTACATATCGTGAGGGAGAGTACAAAACCTCATGATTTATCAGCTATAGAAAATCGAGTTTCAAGCGTCCATGAGCCTGAGATGGATCAGTTGAGTCGATTACTCGTAAACATGGAGTCAGAATTGAATAATGAAGAATTAACCAAAAAAGATGAAGAGAAAAATAGCGAAAAGTCTCGAGAAAATATTCATAACGCTATACCCATTCAAACCCATGAAAAACATCAAGAGGAGACCGAAAATACAAGCTTATCGTATCGTAAGACTAGTCCTGAACCAATTGAGTGCAAGATTATTGTTGCTCATGAGGACACAGACGTGTCATCCGTCGCTTCGGAGGATTCGATGCAGTGCGACTTGgagattcaaaaaataattacttcctCGTATCAATACAAGTATTCTCAGTCTACACCCTGTTTCCCTATCGTCAAAAAGAAGTTCCATCGGTCTTTGTCAAGAGCTTCTCTACGTTCCGATTTCTACCGTTCGAATGAGAATGTCTGCCCAGTGGACTTTGAGGCTACCAAGCTACAAGACTATCTCAAAGACAATTACAACGATGAGGACATGGAGCTGGAGGAATTGCAGCATCATTCGTACATGAAGCAAAACACCGGCATGGTTGTGGAACGTGCAAGATCTCACACGTCTTTATCCACAAGTATGAATGGCGGTCTTTCCATACTAAAGGCACGTCGGGGTAAAGTACCATCTTCTCCGCTATCTGTACGCAGCTCTTCTCCGTACTATCGTATGCAGGATgaagaggaagaggaggaggaggaggaagaagaggaggaggaagaggaagaTGAGGAGGAAGAAGACACGGATGGTGAGAGTTGTACTAGTTACCATGCAAACGAAAAGGATGATGATGAAGAGTTGGAAGAAGACGAACGTGTCTTGCTAGATGAAAAGAAGGAGGAGCGTGAGAAAAAGGAACTTATTCGTGAAGATTGTAAAGCTGCAATAGCCGCTGAGATCATACAGATGCAGGAACAGTCCGCAGATTTCAAATCTCAGAATTTAATGTCTGATTTGTATTCGGCCGGCCATTTTCCACTGGATCACCATTTGGCGACTAAGCAGCAGCAACAATCTACCATGTCTGTACATCACGAAGGTTATCCCTTATCCAGTAATGAAATCTCACAGAATCTTTTAAACATATCTGAGTGTACTGACCCTACAACTAGCACAGATTCGAAGAGTTACTCCAGCTCGAATAAGTCGTTAATACAAAAGCCGACGACAGAACTACTGAACATCAGCGAGGATGCGCATGCGGGACCGATGAATGTTCTCGAATACGATGGACTACAAATTCTTGTGCCTAGCACATTTATTAGCGAATCATCGCAGAAGGCTGTAAGCGGTACGAGTCAGCAATCGATGTCGAGTAGTGAGAATGGAGCAGGTAATGATGAGGAGGTTAAGAGCGTGAATATGAGAGCAGATGAAACGATGCCTCCGAGGGGCGAACTTTCAGAGCAGGAAAGCAACGGCTGTACCGAACAATCAACCTGGCAGTCGTACATGGGCCAAGAATTGTCACGCATGTCAACGTCTTATGATTTAATGGCACGTGAAAGTTGGGAAGAATCCGAAGGTTCCGAACACGAAGACAACAACGTCGGCCCTCTTCTAGACAGCCGTTCTCTTGCAACCCATTTCACCTCTAGCCTCTTTCTCGATCGTGATCGTAAGACACCTCCTGGTCGGCGCATCTTCAAATGTTCGCACTGTACAGAGGTTTTCGAGTGCCCAAAAGAGCGACGCGTACACAGTACAATGGTACACAAGGAGGCTGGACCTTCGGGTTGCGGTGTCGATAATGCAGACCAGCCGGAACTCAAGGACATTAAGCTGCTGGACGGCCGCGCAGGTGCATTCGAAGACATGTTTGCACCAGGTGCATTACACGCGTACCAAGTGCACCAGCAACCATTGCTTCACCAACTTCAACCGGTTCAGCACTCAAGTTCGGCTAAAGTTGAGATCGATGCTAAACTCGATCCTCTCCATCTTTCCGTAACGAACGAGGTTATCTGTGGTCTCTGTAACCAGCGTTTTAGCAGTGACAAGTCTCTACAGATCCATCACAGACGTATGCATGTTGCTGAGCCGGCGAAACGTGTCCGTGAAAATGCCAAGTGCCAAATCTGCAGTGAGGAGTTCAGTTCAGTCGCGACCTTCAATCTCCATTTGAAAGTTCACCCGCTCGAATGCGGTCAGTGTGGAAAGTATTTCTAtcgcaaacaaaatttcaagCTCCATATGAAGCGCCACTTAGGGATAAAGCCCTTTCCCTGCACCGTTTGCGATAAAGCCTTCCTCACTAAGCAAAAGCTTGACGAACACAATAACGGCCATACGGGTAACGCCCCTGTCAAATGCAATTTGTGTAACGAAACCTTTAGACGGTACTCGAATCTCACACAACATAAGAATCGCCATCATCTGAACATTAAGAAGAAACTAAAGGACTACATATGCCACTGTGGTGAGGTCTTTCATACAAAGAAGAAGCTCGCTTGGCACAAGGAGACTCACGACGAAAAGCCAAAAGCTTGTACGTACTGTAATGAGCGATTCATACATATGGCCAGCTTAACGCGACATATGCGGCGTGCCCACAATAGAAGATTCGTGCCCGACGCTCAAAGAGACAGCGAAAACGTTGAGTGTCCGATTTGCAAGTGCATTTACCTCAGGTCCTCGTTAGCGGTGCACATGCGTGTACACAATGGGGAAAGGCCTTATGAGTGTCAAGTGTGCTCAAAGGCCTTCAGTACTAAGTGGAATTTGCAACTTCATAAGTGGACTCATGCTGCCCGCAGCACGAAACCCTTCAAGTGCAATCAGTGCAGCGCGGCCTTCTACAGACATAGCGATTATACAGCGCACATGAATTCCCACAGGAACGTCAGACCATACACCTGCAATTACTGCGGGGCCCAATTCATTAGAAAGTACAACTGCCTGCGGCACGTCAAGGAACACGAAGAGAACAAAGCGTACACGTGCGACGTTTGTAACAAGACATTTCACAGGTCGTATTATTTGAAGGAACATTTGAGAGTGCACTCTGGAGCGAGACCTTATACTTGCCATATCTGTGGCAAGTCCAGTAGTACGAAGTCCAATCATAATAAGCACGTTAGAATTCATCACGCGCGCGAGCCTGTAAATACGGAAAATTAA
- Protein Sequence
- MDLSTAVSAMSAGAAGGGGGGGGGGGGGGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIRASSGGGSASALLSQACMPQSQQLQAPVTAPTPTPTAAPTLPLPTPSTSTGVQQQQQSTASSSPHVPHAQSPYPIGPIFECPPINAMIPPPQFASFSYQQFINNGTMMIPAQYAMAQAQPPQTSQMMQMLYSPYGMYHQQQIPTVQMISAPPMMPTSSTTLPTTVPAVTTRIRPAANTSNVTLTAINEKIATTTSPPAPLPPPPPLRPTTCSQQQQQQQQQQQQLVVETPKQHIVQEILPGPDRILPDLEIPTTPEPPQADEEDEQNNVHVEHREQQIQNKCMQEEQRHVIEQYQRENSPTLISNSCNNNTDDDKTERILPEIEDDKEIESLIVRETEKVDNYKEIELQESIGQVESSIMKENTKKESIENIRANEVENCKKFEEKSEGSVHIVRESTKPHDLSAIENRVSSVHEPEMDQLSRLLVNMESELNNEELTKKDEEKNSEKSRENIHNAIPIQTHEKHQEETENTSLSYRKTSPEPIECKIIVAHEDTDVSSVASEDSMQCDLEIQKIITSSYQYKYSQSTPCFPIVKKKFHRSLSRASLRSDFYRSNENVCPVDFEATKLQDYLKDNYNDEDMELEELQHHSYMKQNTGMVVERARSHTSLSTSMNGGLSILKARRGKVPSSPLSVRSSSPYYRMQDEEEEEEEEEEEEEEEEDEEEEDTDGESCTSYHANEKDDDEELEEDERVLLDEKKEEREKKELIREDCKAAIAAEIIQMQEQSADFKSQNLMSDLYSAGHFPLDHHLATKQQQQSTMSVHHEGYPLSSNEISQNLLNISECTDPTTSTDSKSYSSSNKSLIQKPTTELLNISEDAHAGPMNVLEYDGLQILVPSTFISESSQKAVSGTSQQSMSSSENGAGNDEEVKSVNMRADETMPPRGELSEQESNGCTEQSTWQSYMGQELSRMSTSYDLMARESWEESEGSEHEDNNVGPLLDSRSLATHFTSSLFLDRDRKTPPGRRIFKCSHCTEVFECPKERRVHSTMVHKEAGPSGCGVDNADQPELKDIKLLDGRAGAFEDMFAPGALHAYQVHQQPLLHQLQPVQHSSSAKVEIDAKLDPLHLSVTNEVICGLCNQRFSSDKSLQIHHRRMHVAEPAKRVRENAKCQICSEEFSSVATFNLHLKVHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHNNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRDSENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464146; iTF_00305795; iTF_01524199; iTF_00708686; iTF_00708105; iTF_01216970; iTF_00845398;
- 90% Identity
- -
- 80% Identity
- -