Pcor011370.1
Basic Information
- Insect
- Platyscapa corneri
- Gene Symbol
- ZFX
- Assembly
- GCA_018907185.1
- Location
- JACCHW010000016.1:2479303-2486080[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 4.7e+02 3.3 0.1 3 23 18 38 17 38 0.94 2 15 2.6 8.7e+02 2.5 3.3 1 20 939 958 939 962 0.76 3 15 0.0044 1.5 11.2 1.1 3 23 1046 1067 1044 1067 0.96 4 15 0.0023 0.76 12.1 0.4 2 23 1080 1101 1080 1101 0.98 5 15 1.5e-05 0.0051 18.9 2.3 2 23 1104 1125 1103 1125 0.97 6 15 0.04 13 8.2 0.4 1 23 1131 1153 1131 1153 0.91 7 15 2.1e-05 0.007 18.5 4.5 2 23 1160 1181 1159 1182 0.95 8 15 0.093 31 7.0 3.7 5 23 1195 1213 1194 1213 0.97 9 15 1.9e-05 0.0063 18.6 1.5 3 23 1220 1241 1219 1241 0.97 10 15 0.0086 2.9 10.2 0.3 2 23 1257 1277 1256 1277 0.97 11 15 5.7e-05 0.019 17.1 0.7 1 20 1283 1302 1283 1305 0.92 12 15 7.1e-05 0.024 16.8 2.7 1 23 1313 1335 1313 1335 0.99 13 15 0.002 0.66 12.3 3.2 1 23 1341 1363 1341 1363 0.97 14 15 3.6e-06 0.0012 20.9 3.9 1 23 1369 1391 1369 1391 0.99 15 15 0.00026 0.086 15.0 7.2 1 23 1397 1419 1397 1420 0.96
Sequence Information
- Coding Sequence
- ATGTCAGCGGGGGCAACCAATGCAGCGGGGGGGGCCGGAGGGGCTGTGGCCTGTCCGGTGTGCACGTTGTACCTGCGCGAGGGCATCAGCTTACAGAAGCACTTGGACACACATCCTAAGGAGCAGGTTATCGAGGCTCTCATACGAGCCAGCAGTGGCGGGGGTAGTGCGTCGGCCCTTCTCAGCCAGGCCTGCATGCCTCAGACACAGCAGCCTCAGGCAACGGTCCCGACTCCAACCCCGACACCGACACCTGCACCAAGCTCGACCACCAGTGTCCAGCAGCAGCAGCAGCAGTCGCCGCCTGCATCTTCAAATTCACATGTTCCTCATACTCAGTCACCTTATCCGATAGGACCTATATTTGAGTGTCCGCCGATCAACGCTATGATACCCCCGCCCCAATTTGCGTCTTTTAGCTACCAACAATTTATTAACAATGGTACAATGATGATACCTGCGCAATACGCAATGGCTCAAGCGCAACCGCCTCAAACCAGCCAGATGATGCAGATGTTATACAGTCCTTATGGTATGTACCATCAGCAACAGATTCCCACAGTTCAGATGATCTCAGCACCACCAATGATGCCCACTTCCTCGACGACGTTACCGACAACAGTGCCTGCAGTTACGACGCGCATAAGGCCCGCCGCGAGCACGAGCAATGTCACGCTCACGGCGGTTGATGAGGAGGATGAGCAGAACAATGTGCACGTGGAGCATCGTGAGCAACAGATTCAGAATAATTGTATGCAAGAGGAACAGCGGCATGTTATTGAACAATATCAAAGAGAAAATTCATCGGCGCTGAACAGTAACTCTTGTGACAATAATGCTGATGATGACAAGACTGAAAGGATCCTACCGGATATCGAAGATGATAAAGAAATCGAATCACTTATAGTGCGGGAAACAGAAAGGGTAGATAATTATAAAGAAATTGAAGTACAAGACACGGAATCTATTGGACAAATCGAAAGTTCAGTTTGTAAAGAAAATGCGAAGAAAGAGATTATAGGAGATGCTCATAAAAATGAAGCAACGAATTGCAAAAAGTTCGAAGATAAATCAGATGATGATGACGTACACGTTATAAGTGAAAGTATGGAACCACATGATTTGTCAACCAATGAAACTCGAGTTGCAAGTGTTCATGAGCCTGAGATGGAGAAGTTAAGCCGATTACTTGGAAACATGGAGTCTGAATTGCACAATGAACAATCAACCAAAAAAGATAATGAGAAAAATAGAGAAAGGTCTCGAGAAAGTGTTCGTGAGATCTTACCAATTGAAAACCTCGAAAAACAGGATGAGGATAAAAGCCCAAGTGTGTTGTATCGTAAGAGCAGTTCTGAATCAATTGAGTGTAAAATTATTGTTTCACATGACGAATCGGACGTGTCATCCGTGGCTTCAGAGGACTCGATGCAATGTGACTTGGAAATTCAAAAGATAATTACCTCCTCTTATCAGTACAAGTATTCTCAATCTACACCCTGTTTCCCCATCGTAAAAAAGAAATTTCATAGATCTTTGTCACGAGCATCGCTGCGCTCCGATTTCTACCGCTCAAATGAGAACATTTGCTCCGTAGACTTCGAGGCCACCAAGTTACAAGACTATCTTAAAGATAATTACAATGACGAGGACATGGAGCTGGAGGAATTACAACATCATTCGTATATGAAACAGAATAATGGTATTATCATGGAACGCGCAAGATCTCATACGTCTTTATCGACGAGCATGAGTGGTGGTCTTTCCTTATTGAAGACCCGACGGAGCAAAGTATCTTCCCCATTATCTGTGCGCAGCTCTTCGCCGTATTGCCGTATGGAGGAGGAGGAAGAGGAAGATGAAGAAGACGAAGACGATGAGGAGGACGAGGAGGACGAGGAGGATGAAGATACGGATGGCGAAAGTTGTGCTGGTTATCATGAAAATGAAAAGGATGATGACGAAGAGCTGGAAGATGAACGTCTCACGCTGGAAGGGAAAAAGGAGGAACGTGAGAAGAAAGAGCATATTCGCGAAGACTGCAAAGCAGCGATAGCGGCTGAGATCTTGCAGCTGCAGGAGCAATCTGCAGATTTTAAATCTCAGAATTTAATTTCCGATTTATACTCGACTGGTCACTTTCCACTAGATCATCATTTAGCTACTCAGCAGCAGCAGCAGCAATCCACTATGTCGGCACATCATGAAGCTTATCCTTTATCCAGTAACGAGATATCCCAAAATCTTTTGAACATGCCCGAGTGCACAAATCCTACAACCAGCACAGATTCAAAAAGTTATTCCAGCTCAAACAAGTCGTTAATACAGAAGCCGTCGACGGAATTACTTAATATCAACGAAGATGCTCACGCGGGACCGATAAATGTCCTCGAGTATGACGGACTTCAAATTCTTGTGCCCAGTACATTTATTAGTGAGTCGTCGCAGAAGGCCGTAAGTGGTACGAGTCAACAATCGATGTCTAGTAGTGAGAACGGAGCGGGGAATGACGAAGAGGTTAAAAGCGTGAACATGAGGGCGGATGAAACGATGCCCCCCAGGGGAGAACTTTCGGAACAAGAAAGCAATGGCTGCACCGAACAGTCAACCTGGCAGTCGTATATGGGTCAGGAGTTGTCACGCATGTCGACGTCCTACGACTTGATGGCGCGTGAGAGTTGGGAAGAATCCGAGGGCTCCGAACACGAGGACAATAACGTTGGCCCTCTTCTCGACAGTCGTTCCCTCGCAACCCACTTTACCTCCAGTCTCTTTCTCGATCGCGATCGTAAGACGCCCCCCGGTCGGCGCATCTTCAAGTGCTCGCACTGCACGGAGGTGTTCGAGTGCCCAAAGGAACGACGCGTGCACAGCACGATGGTGCACAAGGAGGCTGGTCCTTCCGGCTGCGGTGTCGACAACGCGGATCAGTCCGAGCTAAAAGACATTAAGCTGTTGGACGGTCGCGCGGGTGCTTTCGAGGAGATGTTTGCGCCGAGTGCGCTGCACGCTTACCAAGTGCACCAGCAGCCGCTGCTCCACCAACTTCAACCGGTGCAGCATTCGAGCTCCACCAAGGTCGAGATCGACGCCAAACTCGATCCTCTGCACCTGAGCGTGACGAGCGAGGTGATCTGCGCCCTCTGTAACCAGCGCTTCGGCAGTGAAAAGTCTCTGCAGATCCATCACAGACGCATGCACGTCGCCGAGCCGGCAAAACGCGTCCGCGAGAACGCCAAGTGCCAAATTTGCAACGAGGAATTCAATTCAGTTGCGACGTTCAATCTCCACCTGAAAGTGCATCCGCTCGAGTGCGGCCAGTGCGGCAAGTACTTCTATCGCAAGCAGAACTTCAAGCTCCACATGAAGCGCCATTTGGGGATAAAACCTTTCCCCTGCACCGTCTGCGACAAGGCCTTCCTGACCAAGCAAAAACTGGACGAGCACAATAACGGGCACACGGGCAACGCCCCCGTGAAGTGCAACCTGTGCAACGAGACGTTCAGGCGCTACTCGAATCTGACCCAGCACAAGAATCGGCATCATCTCAACATTAAGAAAAAGCTCAAGGACTACATATGTCATTGCGGTGAAGTGTTCCACACGAAGAAGAAGCTCGCCTGGCACAAGGAGACGCACGACGAGAAGCCGAAGGCTTGCACCTACTGCAACGAACGGTTCATACATATGGCGAGCTTGACGCGGCACATGCGCCGCGCCCACAACAGGAGATTCGTGCCCGACGCCCAGAGGGACAGCGAAAATGTCGAGTGCCCGATTTGTAAGTGCATTTACCTGAGATCCTCGCTGGCTGTGCACATGCGCGTGCACAACGGAGAAAGGCCCTACGAGTGTCAAGTGTGCTCCAAGGCCTTCAGTACTAAGTGGAATTTGCAGCTGCATAAGTGGACTCATGCCGCTCGCAGCACGAAACCCTTCAAATGCAACCAGTGCAGTGCGGCCTTCTACAGACACAGCGATTACACGGCGCATATGAATTCGCACAGGAACGTGAGACCGTACACCTGCAACTACTGCGGGGCCCAGTTCATCAGGAAGTACAACTGTCTGCGGCACGTGAAAGAGCACGAGGAGAACAAGGCGTACACGTGCGACGTGTGCAACAAGACGTTTCACAGGTCTTACTATCTGAAAGAACATTTGAGAGTGCACTCGGGAGCAAGACCTTACACTTGTCACATTTGTGGCAAGTCCAGTAGCACTAAGTCCAATCACAATAAGCACGTTAGGATTCATCATGCCCGCGAGCCTGTAAATACGGAGAATTAA
- Protein Sequence
- MSAGATNAAGGAGGAVACPVCTLYLREGISLQKHLDTHPKEQVIEALIRASSGGGSASALLSQACMPQTQQPQATVPTPTPTPTPAPSSTTSVQQQQQQSPPASSNSHVPHTQSPYPIGPIFECPPINAMIPPPQFASFSYQQFINNGTMMIPAQYAMAQAQPPQTSQMMQMLYSPYGMYHQQQIPTVQMISAPPMMPTSSTTLPTTVPAVTTRIRPAASTSNVTLTAVDEEDEQNNVHVEHREQQIQNNCMQEEQRHVIEQYQRENSSALNSNSCDNNADDDKTERILPDIEDDKEIESLIVRETERVDNYKEIEVQDTESIGQIESSVCKENAKKEIIGDAHKNEATNCKKFEDKSDDDDVHVISESMEPHDLSTNETRVASVHEPEMEKLSRLLGNMESELHNEQSTKKDNEKNRERSRESVREILPIENLEKQDEDKSPSVLYRKSSSESIECKIIVSHDESDVSSVASEDSMQCDLEIQKIITSSYQYKYSQSTPCFPIVKKKFHRSLSRASLRSDFYRSNENICSVDFEATKLQDYLKDNYNDEDMELEELQHHSYMKQNNGIIMERARSHTSLSTSMSGGLSLLKTRRSKVSSPLSVRSSSPYCRMEEEEEEDEEDEDDEEDEEDEEDEDTDGESCAGYHENEKDDDEELEDERLTLEGKKEEREKKEHIREDCKAAIAAEILQLQEQSADFKSQNLISDLYSTGHFPLDHHLATQQQQQQSTMSAHHEAYPLSSNEISQNLLNMPECTNPTTSTDSKSYSSSNKSLIQKPSTELLNINEDAHAGPINVLEYDGLQILVPSTFISESSQKAVSGTSQQSMSSSENGAGNDEEVKSVNMRADETMPPRGELSEQESNGCTEQSTWQSYMGQELSRMSTSYDLMARESWEESEGSEHEDNNVGPLLDSRSLATHFTSSLFLDRDRKTPPGRRIFKCSHCTEVFECPKERRVHSTMVHKEAGPSGCGVDNADQSELKDIKLLDGRAGAFEEMFAPSALHAYQVHQQPLLHQLQPVQHSSSTKVEIDAKLDPLHLSVTSEVICALCNQRFGSEKSLQIHHRRMHVAEPAKRVRENAKCQICNEEFNSVATFNLHLKVHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHNNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRDSENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219241;
- 90% Identity
- -
- 80% Identity
- -