Pmel008318.1
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000032.1:3707230-3723450[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-16 9.1e-13 48.4 0.1 5 58 725 778 721 826 0.89 2 2 1.2 4.7e+03 -2.0 0.0 31 57 929 957 912 989 0.73
Sequence Information
- Coding Sequence
- ATGGCCGAAAAACAGTGTTGCATAGAAAGTTGtacttcatcatcatcaaGAAATGAAGACGTTGGAGTGACATATCATAAGTTTCCCAAAGATCTAGATATTTACAATAGTTGGATTCGTATTACCCATACAAGACCTAACACTcacaataatttgtatgtgTGTTCAAGGCATTTTTGTAAAAGTGATTTTCAAGTATATCAAGAATCAAAATATGTACTAAAGTCAGAAGCACTGCCATCAATATTTCCTTGGACAATGGCAGAAGACAATGACTTTCCCGAGGCTCAAATTGGCAgtttatttaaagatgatAATGTTAATACATCCAATAGCATCAAAGAAGCAGACCCAGAGAATATAGAATCAATAAAGAAATTCATTGAAGGTCAACATCAAATGACAGAGAATGTTGACAAAATGAACACTTTAAGCGACTTAAACCTAAGTGTAACAGCTTTAGATGTAATACACAAGTCCCAAGAGACACCAATAATAGCTAATACTGTTATGAATATGATTATTAATAGTTCAAATGCCAAGGTAAATCAAAaagaagaaattaaatataacgtaAACCACTGTGATAAGGGCACAGTGTCATTGAAAGTTGGCAGTAAAGTGGAAGCAAAAGACTTTGGTGGTCAGTGGCATGCTGCATCTATAGTTGAAGTTGATTATGATGAGGTGGAGGTCTTAGTTCATTATGAAAATTCtactaatatgCCAGATGAATGGATAAGCGTGAATAGTTCTCGTTTGCgaccttttaaattaaattgcccCACTGAAGTAGCGCCGCCAAATATGCCGCCAAAACCAACTGGACAGAGTACAGAAATTCTTCCTAAAGATGAAATTAAGGtggaagaaaagaaaaaagtaacttttattGAAGGAGAGAGGTGTTTAGCGCGTTGGAGAGACAATAAAAGGTTTATGGCTACGATTCAGAATGCCTTGGGTCATGGTCAATATGAAATTGTGTTTGATGATGGGTTCCACTGGAAATGTTCAGTTACAAGGTTgcataaattaaaagattcCTCCGGTAAACCTTTTGAGAATCTATCGGTAGATACATCAATGTCACCGAGTACTTCAGCGTTATCTCCGCTGTCACCAGGCATTGGGCCGGCATTCCATACGCACCTCTTTGATCCCACCAGAGACTACTTAGGATCCAAAAGCGAGCGTCGCGAAATGaaaagaaaacttaatattaaggaaatttttaatatcggTCAGAAAAAGCGGAAAATAAAGCCAGAAAACACTGaaccaaaaattataaaaaggacaataaaaattgaaccTAAACCTAAGGAAATTAAGAAAGAATTACCGGACGCAGTTGCATCAATTATTGGAACTGTAGATGGTAAGGAGCCCGAAGACACAAAACCAGAAACACTTGAAAGCAACAATGAAGGTGATGAAAAAATAACTCTGGATGATTTCATTACTCCAAAGGAAGCTTCGTACTGGTCAGACTCTGATGCTGCCAACCGCTCGGACCCGGTTTCTAATGAAGAAGATACTCTAGAACAATTCGATAATCCCGACGTAAGTATAAACGAAGAAGTAATCGATAAAATGAAAGAAGTAATCAGTAAACTAGAAGAGAGTTTGAATAAAGTGGAAAGTATAGAAGACGTAAAAGAAACACCACAGCCAGAAATAAATCTCGAAGTCATACAAGTCGATCCTAATGACGTGGAAATTGATTTAGAAACGgaagaaatagataaaattgAAACGAGAATTGAAGATGAAATCAAAACTGAACAAACACCGGAACCAAATGATGTAAATAGACAGATGAAAATCGAAGAAAAACCGAAGAAGTTAGCATCCAAAGTAAAGAAGACTAAAAAGTTGAGGTTGTTACAGgagaaaaaagttaaaaagcaGGTTGAGAAGGTTAAGAATGAATTGGAAGAGATGAAAAAGCAGGTAGAGGAAATGAGAAAGCAAATGTTGCAGAAGACAGAAGAACTTGCTACGCATCAACAGCAACGTGCAGCACCGaACGAAATGCCAATAAGTTTCCTCTTGCCGGGTGAGTGGTGTTGTCGGTGGGTTAATGGTGAACCAGTGGGACAAGTTCACGAGACGGTTGAGCCCCGGGCAGATGCTCATAAAAAACCCGCGTTGCCACGACGCACTGTGATGGTGGAAGATAAACGACTACCCGAAGGTTGGAAGAAAATTATGGTGAGAAGGAGTTTGGGACAATCTGCTGGAAAATGGGACGTTGTTTTACTcagTCCGGATCAAAAGAGATTCCATACAAAGCAAGAGATGCGAACCTACCTTGATCAAACTCAAGGCGAGTTTAAAGCTTACGAAAACGCTTTATTGGACTTTGGGGTACATCTGAAGTTGTCCCGAAGAATGGGATGGGTTTCCAACACTGGCCCCTCCAATGCACAAGTTTCGAATGTTTCACCATTTgtaaatagaaagaaattgaGCACTAAAGATGGGAAAAAGAGGCTGAAGATACGGAAGCCAAATTATATCTTACAAAGACAAGGAGAAATAGGACAACCATCACAAAAATCTGGTAAAACGAAAGAAACGGATCTTGATATGCAAAATCCTCCAATTGAAAATGGTTTTGTATACGTTGGATCTCTCAAAGTCCAAGTAATTGACAGCTTACTGAGATGTCCCGCTGAAGGTTGTCTCAAGAACTTCAGAAATAACACCCTCTTAAAAATGCACATAAAGCATTATCATCGCGAGTTAAAGAAAATGTTGGGTAAAACTCCAAAAGTCTTAGATCTGGCCTACGCTCGAACGAGGCCCACCGGCGAGAAAGTCAAAAAGAAAGTTATCAAAGTGAAAATTCCTAGAGTTCAAAAATCTAATGTTGTCGTCGATCCTAAACCGGAAGTGGGCGAGCCACAACCGGAACTACGCATCAACGTAACCCCCTTTCCCATGGAAGAGACACAGGAAGATTCACCAAAACTTCGCCAAGCGCTTATACCAAAACCGGTAAAGCGTCCAAAAGTCCTATTACCGGTTCGTAAACCGGAACAGGAGGTCTCCGAAGATGATAAAACGGAATTGGAGTGTGTCGATTTCGAGGCTGCCATATCTACCCATACAGTAACAAAGCCGGGTGCTGACTTCAAACAGATAGAAATTAAACCTGCTTTTAGCGAGGATGAAGAATGGCCCTTACATTCTGATGTTGAAACTAGATCTAGTTTCCCTGGTTCCGGTACTCCGGACTCAAAGACAATGGATAAAGTGGCAACACCTAACCTAGGTGTATCATCAGAGTCAAACGAAGATGCGAAGGAAGGGGAACTATACATGTTATCGGAAACCGGTGAACGAATTAAGATCGAGCGTATGAAGCGtgaagagataataaattgcCATTGCGGCTTCCGGGAAGAAGATGGACTTATGGTACAATGCGAACTGTGTTTGTGTTGGCAACACGCGCTTTGCCATAATATTCACACTGAGGGGGAGgtACCAGAAAAGTACACGTGCAGCATTTGTTTGAATCCAAAACGCGGTCGTCGGTCAAAGCGTTTCCTACACGATCAAGACAGATTGTACGAAGGCCTACTCCCTGGGGCTAAGCCCTGTGAATTCCTGCGCCGCTCTCATGAGCTCTCTGGCAATTTGCTGCGAATACAGGACGCTTTACATGCTATGCGAGTCAAGTACTATGTCACCACcaaaAAGAACCATCCAAAACTATACCTTTGGGCCAAAGACTGGGAAAACGCTGAATTGAATTTCACTCAAGAGAGACTAAATTCCGATTATTCTGATCTCAAcattatcataaataatattggaaAAGAGAATTTGCCAGTTAAAAGTCAAGATGACGAAAGGGAGGCTCTTCTCAATCTCCCTGGATCAATTCCTGGAGTGCCTTTAGACTTTCCTATTAGTACTACAGAGTTAGAGAGAATGGCCAGGTCTTTACAAGagCAAGAATCCCCTGTGTCAGCCCCACAACCTGAAGCACCAATTGATAATAATGTTTGTCGGGAACGATTACTAAGACATGTACAAAGATGTCAGGCGCTTATTGATGCAAGACTTGACTCTATTGAAGCGCAGGTTGCTGAATTGGAATCCCAAGATCCTTCATTTGAAGATGATGAAACGGCAGACTTTTTCCCACGAACAAAACAAACCATTCAAATGTTGATGCGAGATCTTGAAAATATGGAAGAGTTGGGTGTTATAActtga
- Protein Sequence
- MAEKQCCIESCTSSSSRNEDVGVTYHKFPKDLDIYNSWIRITHTRPNTHNNLYVCSRHFCKSDFQVYQESKYVLKSEALPSIFPWTMAEDNDFPEAQIGSLFKDDNVNTSNSIKEADPENIESIKKFIEGQHQMTENVDKMNTLSDLNLSVTALDVIHKSQETPIIANTVMNMIINSSNAKVNQKEEIKYNVNHCDKGTVSLKVGSKVEAKDFGGQWHAASIVEVDYDEVEVLVHYENSTNMPDEWISVNSSRLRPFKLNCPTEVAPPNMPPKPTGQSTEILPKDEIKVEEKKKVTFIEGERCLARWRDNKRFMATIQNALGHGQYEIVFDDGFHWKCSVTRLHKLKDSSGKPFENLSVDTSMSPSTSALSPLSPGIGPAFHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKKRKIKPENTEPKIIKRTIKIEPKPKEIKKELPDAVASIIGTVDGKEPEDTKPETLESNNEGDEKITLDDFITPKEASYWSDSDAANRSDPVSNEEDTLEQFDNPDVSINEEVIDKMKEVISKLEESLNKVESIEDVKETPQPEINLEVIQVDPNDVEIDLETEEIDKIETRIEDEIKTEQTPEPNDVNRQMKIEEKPKKLASKVKKTKKLRLLQEKKVKKQVEKVKNELEEMKKQVEEMRKQMLQKTEELATHQQQRAAPNEMPISFLLPGEWCCRWVNGEPVGQVHETVEPRADAHKKPALPRRTVMVEDKRLPEGWKKIMVRRSLGQSAGKWDVVLLSPDQKRFHTKQEMRTYLDQTQGEFKAYENALLDFGVHLKLSRRMGWVSNTGPSNAQVSNVSPFVNRKKLSTKDGKKRLKIRKPNYILQRQGEIGQPSQKSGKTKETDLDMQNPPIENGFVYVGSLKVQVIDSLLRCPAEGCLKNFRNNTLLKMHIKHYHRELKKMLGKTPKVLDLAYARTRPTGEKVKKKVIKVKIPRVQKSNVVVDPKPEVGEPQPELRINVTPFPMEETQEDSPKLRQALIPKPVKRPKVLLPVRKPEQEVSEDDKTELECVDFEAAISTHTVTKPGADFKQIEIKPAFSEDEEWPLHSDVETRSSFPGSGTPDSKTMDKVATPNLGVSSESNEDAKEGELYMLSETGERIKIERMKREEIINCHCGFREEDGLMVQCELCLCWQHALCHNIHTEGEVPEKYTCSICLNPKRGRRSKRFLHDQDRLYEGLLPGAKPCEFLRRSHELSGNLLRIQDALHAMRVKYYVTTKKNHPKLYLWAKDWENAELNFTQERLNSDYSDLNIIINNIGKENLPVKSQDDEREALLNLPGSIPGVPLDFPISTTELERMARSLQEQESPVSAPQPEAPIDNNVCRERLLRHVQRCQALIDARLDSIEAQVAELESQDPSFEDDETADFFPRTKQTIQMLMRDLENMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00878869;
- 90% Identity
- iTF_01204961; iTF_01205718; iTF_01205763; iTF_01206615; iTF_01206566; iTF_01203258; iTF_01203303; iTF_01202527; iTF_01202483;
- 80% Identity
- iTF_01204961;