Basic Information

Insect: Phymatocera aterrima
Gene Symbol: Prdm15
Assembly: GCA_963170745.1
Location: OY720670.1:8904833-8909924[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3 1.4e+02 3.6 0.4 2 23 240 261 239 261 0.94

2 14 0.0028 0.29 12.1 2.8 2 23 269 291 268 291 0.95

3 14 1.7e-05 0.0018 19.0 0.7 2 23 461 482 460 482 0.97

4 14 0.015 1.5 9.8 0.5 1 20 486 505 486 507 0.94

5 14 9.9e-06 0.001 19.8 1.5 1 23 515 537 515 537 0.98

6 14 0.0022 0.23 12.4 0.5 3 20 543 560 542 562 0.93

7 14 0.00017 0.018 15.9 6.8 1 23 566 588 566 588 0.97

8 14 0.0037 0.39 11.7 0.1 3 23 609 629 607 629 0.96

9 14 0.008 0.84 10.6 0.8 1 23 634 656 634 656 0.96

10 14 0.0002 0.02 15.7 0.2 2 23 662 683 661 683 0.96

11 14 0.0017 0.18 12.8 7.6 1 23 688 711 688 711 0.95

12 14 0.00039 0.041 14.8 2.0 1 23 717 739 717 739 0.98

13 14 0.00099 0.1 13.5 2.8 1 23 745 768 745 768 0.95

14 14 0.051 5.3 8.1 5.3 1 23 773 796 773 796 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3	1.4e+02	3.6	0.4	2	23	240	261	239	261	0.94
2	14	0.0028	0.29	12.1	2.8	2	23	269	291	268	291	0.95
3	14	1.7e-05	0.0018	19.0	0.7	2	23	461	482	460	482	0.97
4	14	0.015	1.5	9.8	0.5	1	20	486	505	486	507	0.94
5	14	9.9e-06	0.001	19.8	1.5	1	23	515	537	515	537	0.98
6	14	0.0022	0.23	12.4	0.5	3	20	543	560	542	562	0.93
7	14	0.00017	0.018	15.9	6.8	1	23	566	588	566	588	0.97
8	14	0.0037	0.39	11.7	0.1	3	23	609	629	607	629	0.96
9	14	0.008	0.84	10.6	0.8	1	23	634	656	634	656	0.96
10	14	0.0002	0.02	15.7	0.2	2	23	662	683	661	683	0.96
11	14	0.0017	0.18	12.8	7.6	1	23	688	711	688	711	0.95
12	14	0.00039	0.041	14.8	2.0	1	23	717	739	717	739	0.98
13	14	0.00099	0.1	13.5	2.8	1	23	745	768	745	768	0.95
14	14	0.051	5.3	8.1	5.3	1	23	773	796	773	796	0.95

Sequence Information

Coding Sequence: ATGAGTTTACCTAttgccgaagaaaaaaagaacgagaagacTGAAGAAGTCAGCTTGTCAGTTTGCGGTGTTTGCGGACAACAACATGATACAACAACGTGTCCATTTTTACTCGATCTCGATCATATCAAAGATACTCCAGTTCTGTCGAGAGCTAGACAAACTATACCAAAGAATTTGGAGATCACCAGAATGGCTGATGGATCGATAACCATTATAGCAAAGATTGAATTACCACGGGGTACGACATTTGGTCCGTTGTATGCAAAGAGAATATGGACAATGAATCCACTCATTCATTTTCCCATCAGAGTGTTTGGAAATTCGCCCGCTGATACATACCACCTGGATTATTCAAACGAGAATAACTCAAACTGGATGTCCTTTGTCCAACCAGCTTCAAATGCTAAAGAGCAAAACTTGATATGCTATCAGGTGCAGCAAGACATTTTCTACACAGCGATGAGGCAGATAGCGATTGGTGAGGAGCTTCGGGTTTGGTACGCTCCTCACTATgcattgaaaatgaagatgcCGTTGTTCAATGTAGAGTTTGCAAATGTTAGCGCGACGATTCCGGAGCGCGAGATACAGCAGACAACAAAAACGGAGTCAAGCCAAGATCAAATAGGGATTTTGAACAAAGATGTTGCTCAAGAACTGGCAGAAAAATTACCTGCACAACATCTTGGCGCACGAGACGACAAAGCAAATTGGAACTGCAGGATTTGTTCCACCGTTATTTGCTCCGTTGTTTCATACGCTAAACATTTAATGGAACACTATAAACCGTTGATCGGTGTTTATTGCAATATTTGTAACAAGAAATGTAACAATGTTACGGCTTTGGAAAGACACAAGAATTCGAAACACCCCGAAGAATCATCAAATGACAGTATGGTCGGTATACCGACGTCAGAGAGCCAACAGCAACAAAATGCACAAACCGTTTTCTTGAACATAAGCGATTCCGAAGGTCAAACATCGGACGCGATGAAAgatatattggaaaaatttaaagCAGGCAAAGCGATAACGGAGAGTAGTTTATTGTCGACATCGTCATTATCCTCATCCTGTGTGAATAACGATAAAGAAAACCACTCGGATCTTCCTCTATTGGATACGAATTCGATAAATGTTAGTGATTTGCTACAGAATAACGTTTCTTCGTTGATGGAAAATTCTTCGCTGAAGTCAATCCTTGAAAATCAATGCCTAAATATGAATTTGGGGCTCAGTTCATCCATGAGCGACACAATGCTTTCAGAGAATATTTCGGCTAATGATTCAGTAAAATTTAATGTCGAAGAATTGGCTTCTGAGCTTCTAGACATCGTTCCTGATGTCGATAACATTAATAAAAGAATTGATAATCTCGAATGCGACatttgtgataaaaaatttgacaagGTAGACTACCTATATCGACATTTAAGAAAACACACAGGCGAATTTATTTGCCCTTCTTGTTTAGCGGTATTTGCAAGGAAAGAGAATTTGCTTTCACATACatgtttttcacaaaaattagACTACCATTACGAATGTCCGTACTGTCAGAAACCTTTCATGTTGAAAAAGTACCTGCGAAGGCACATGGTGAAGCACACAGAATGGAATAACTGCAAGTGGTGCCATGTGCCCTTTTCATCACCGTCAGAACTTGAGGCGCACGAATGTTTGAAGCCAAAACACGAGTGTTTGGAATGCAAGAAGCGATTCGTTCACCGAGCACATTTGAACAGGCATCTGAAATTACATGCAAATCCGAAGCCCGTTGTTAAACGAGTTAGAAAAAAGCAGCCAGATAAACCGGTGATTTGTGAAAAGTGCGGCGATGTGTTGAAAAGTCCCTACAGTTTAAAACAGCACCTGAATTTACATGGAGAGAGGGCATTCGAGTGCGACATTTGCCAGAGAAGGTTCCATCGTATAGGAGTACTAAAAGAACACAAAGCTATACATCAAGCAGCACAAATGCCCTGCACGATATgtggaaagaaattaaaaaGCAAGAAAGCTTTAGACATCCACATGCTTCTAcatggaaataaaaaacaccAGTGTGATAAATGCGATAAAagtTTCTTCCAAAAATGTAATTACCTAAAGCATTACAATCAAGTTCATGGGGATAAAAAGATTTACAAATGTGAACAATGTAATTCACAATTTACAAATAAATCAAGTTTTGGTAAACACATTGAAAACCACACAACACCTGCACAATTCGCATGCGCTTCTTGTCCAAAATCGTTCCACaagGAATATCAATTGAAACGTCACACACAATCCAGCCATAGCGGAATAGTTTACCGATGTCCCTATTGCAAGATGGCTGGAAGGCATAGACACAGTATGCGCCGACATTTTGAGCGCCAGCATAGCGTGCTAAAAGAAGATTGGGATCAACCTGGTTTTGTGAATCAATTAGCGGAGAAAATTCCAACTGTAGAAATGGAAGTAGAAACTGTTGAACAAAACGAGAGCGATAAATTTGTACGAGTTACATATGAGGATATAAATTCTAAAGACTTCGAAGACACAGATAATGCGCAGGACGGAGCAATGCTTTTATCCGTGACTGGGATGGACCAGAGTGAATTTTTGCATCCTCCTCAAGGCGACGCTGAGAGCGACCTTAATGGCGGAGATGTAAATTGCAATTCGTTGAACGgtCACGAAATTCTCCTGCAAGTAGCAGGAATCGAACAAGCGGCATCTTCAAGCATAGTAAATCCGGATTTATCATTAGCGGAAGTACCGCAGCTTAGCATAAGTGAGTCTGATGCACGTTTGGCCGAATCTGTTTTAGGGAATGCTTATATATTCGGAGAAGACGGAGGAGATATAATGTTCTACGTACTTGATAATGCACCAATTATTACAGAATATTAA
Protein Sequence: MSLPIAEEKKNEKTEEVSLSVCGVCGQQHDTTTCPFLLDLDHIKDTPVLSRARQTIPKNLEITRMADGSITIIAKIELPRGTTFGPLYAKRIWTMNPLIHFPIRVFGNSPADTYHLDYSNENNSNWMSFVQPASNAKEQNLICYQVQQDIFYTAMRQIAIGEELRVWYAPHYALKMKMPLFNVEFANVSATIPEREIQQTTKTESSQDQIGILNKDVAQELAEKLPAQHLGARDDKANWNCRICSTVICSVVSYAKHLMEHYKPLIGVYCNICNKKCNNVTALERHKNSKHPEESSNDSMVGIPTSESQQQQNAQTVFLNISDSEGQTSDAMKDILEKFKAGKAITESSLLSTSSLSSSCVNNDKENHSDLPLLDTNSINVSDLLQNNVSSLMENSSLKSILENQCLNMNLGLSSSMSDTMLSENISANDSVKFNVEELASELLDIVPDVDNINKRIDNLECDICDKKFDKVDYLYRHLRKHTGEFICPSCLAVFARKENLLSHTCFSQKLDYHYECPYCQKPFMLKKYLRRHMVKHTEWNNCKWCHVPFSSPSELEAHECLKPKHECLECKKRFVHRAHLNRHLKLHANPKPVVKRVRKKQPDKPVICEKCGDVLKSPYSLKQHLNLHGERAFECDICQRRFHRIGVLKEHKAIHQAAQMPCTICGKKLKSKKALDIHMLLHGNKKHQCDKCDKSFFQKCNYLKHYNQVHGDKKIYKCEQCNSQFTNKSSFGKHIENHTTPAQFACASCPKSFHKEYQLKRHTQSSHSGIVYRCPYCKMAGRHRHSMRRHFERQHSVLKEDWDQPGFVNQLAEKIPTVEMEVETVEQNESDKFVRVTYEDINSKDFEDTDNAQDGAMLLSVTGMDQSEFLHPPQGDAESDLNGGDVNCNSLNGHEILLQVAGIEQAASSSIVNPDLSLAEVPQLSISESDARLAESVLGNAYIFGEDGGDIMFYVLDNAPIITEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00719682; iTF_00718868; iTF_00175274; iTF_00174520; iTF_00175932; iTF_00938989; iTF_00939849; iTF_00060592; iTF_01049143; iTF_01048419; iTF_01413659; iTF_01412587; iTF_01414444; iTF_01411793; iTF_01303677;
90% Identity: -
80% Identity: -