Npin006008.1
Basic Information
- Insect
- Neodiprion pinetum
- Gene Symbol
- Prdm15
- Assembly
- GCA_021155775.2
- Location
- CM037741.1:13106096-13113131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 2.8e+02 3.1 0.2 2 23 238 259 237 259 0.94 2 14 0.0053 0.8 11.2 2.7 2 23 267 289 266 289 0.94 3 14 1.6e-05 0.0025 19.1 0.7 2 23 453 474 452 474 0.97 4 14 0.022 3.4 9.2 0.4 1 20 478 497 478 499 0.94 5 14 9.5e-06 0.0014 19.8 1.5 1 23 507 529 507 529 0.98 6 14 0.0084 1.3 10.5 1.9 3 20 535 552 534 554 0.93 7 14 0.00052 0.078 14.3 6.9 1 23 558 580 558 580 0.97 8 14 7.5e-05 0.011 17.0 0.2 3 23 601 621 599 621 0.96 9 14 0.0055 0.83 11.1 0.7 1 23 626 648 626 648 0.96 10 14 0.0002 0.03 15.7 0.1 2 23 654 675 653 675 0.96 11 14 0.0017 0.26 12.7 10.0 1 23 680 703 680 703 0.96 12 14 0.0023 0.34 12.3 1.6 1 23 709 731 709 731 0.98 13 14 0.0033 0.5 11.8 6.1 1 23 737 760 737 760 0.97 14 14 0.0033 0.5 11.8 6.0 1 23 765 788 765 788 0.95
Sequence Information
- Coding Sequence
- ATGAATTTACCTGCTGTGGTGCGAAAAAGCAAGGATACTGAAGTCAGCTTGTCAGctTGCAGTGTTTGCGGGCAGCAACATGACACGACAACATGTCCGTTTTTACTGGATCTTCATTATGTTAAAGATGCACCAGTCTTGTCAAGGGCGAGACAAACACTACCTGAAAATCTGGAAATCACCAAAATGGCGGATGGTTTGATGACGGTCACAACAAGGATCGAACTGCCCAGAGGAACAACGTTTGGTCCACTCTACGCTAAAAGAATATGGACAATGAATCCATTAACCCATTTCCCAATTAGAGTATTTGGCAAATCTACCTCTGAAACATATCATCTGGATTATTCAAACGAGAACAGCTCAAATTGGATGTGTTTTGTTGGCCCGGCGTCAAACGCCAAGGAGCAAAATCTGATCTGCTATCAGGTGGAAcaggatattttttacaccgcGATGCGCACAATAGCCATAGGCGAGGAGCTGAGAGTTTGGTACGCACCTTATTATGCGTTGAGGATGAAGATGCCAGTGTTTAACGCTGACTTTGCTAATGTCAGCGCAACTATACCAAATTCAGAAATCCAACAAGTGATAAAGACAGAGAAAAATGGCGAACAGATTGGGTTACTAAAAAAAGATGTCGCTCAGGAATTGGCTGAGAAATTGCCTGCACAGCATCTCGGAGCTAGGGATGATAAAGCAACGTGGAACTGCAGAATTTGTTCAACTGTTATCTGCTCTGTCGTCGCTTATGCCAAGCATTTAATGGAGCATTATAAGCCATTGATTGGCGTTTATTGTAATATATGTAACAAGAAATGTAACAATGTGACgGCCTTGGAACGTCACAAGAGTTCCAAACACCCGGAGGAATCATCCAACGACAGTGTAGTTGGAATACCGACATCCGAAAGTCAACAGCAACAAAATGCACAAACCATCTTCCTGAATATAAGTGATTCCGAAGGACAGACATCGGAAGCGATGAAAGATATATTAGAGAAATTCAAAGCCGGAAAGGCAATAACAGAGAGCAGTTTGTTAGCAACTTCAACGCCGAATGATAAAGATTCTCATCACTCAGATCTACCGATTTTAGACACGAATTCTATAAACGTGAATGATTTACTCCAGAACAATGGTTCACTGATAGAGAATTCGTCACTCAAATCGATCCTTGAGAATCAATGTCTAAACATGAATTTAGGACTGAACACAATGACTGACTCTATGCTTTCAgtggaaaatatttcagcCTCGGATTCTGTAAAGTTTAACGTCGAAGAGCTTGCCTCAGAGCTTTTAGATATTGTGCCTGATGTCGACAATATTAACAAAAGAATTGACAACCTTGAGTGTGATATATGCGATAAGAAATTCGAGAAGGTCGACTACTTATATCGTCACTTGCGCAAACACACTGGGGAATTCATATGCCCTGCTTGTCTACTGGTATTTGCCAGAAAAGAGAATTTGCTGTCACACACGtgtttttcccaaaaattgGACTACCATTACGAGTGTCCGTACTGCCAGAAACCTTTTATGTTGAAAAAGTACTTAAGAAGACACATGGTCAAGCACACAGCTTGGAATAATTGCAAGTGGTGCCACTCTCCGTTTTCATCGCAGTCCGAACTTGAGGCACACAAATGTTTGACCCCAAAGCATGAGTGCCTACAATGCAGCAAACGGTTTGTGCATAGAGCGCACTTGAATCGGCACCTGAAGTTACACGAAAACCCGAAACCAGCGGCGAAACgggtgagaaaaaaaccgCCGGAGAAACCTGTCATATGTGAGAAGTGTGGTGACGTTTTTAAAACTCCGTACAGCTTGAAGCAGCACCTCAGTTCGCACGGGGAGCGAACTTACGAGTGTGACATTTGCCAGCGAAGATTTCATCGCATTGGTGTTCTGAAAGAGCATAAAGCAATTCATCAGGCAGCGCAAATACCGTGCAGCATTTGCgggaagaaattgaaaagcaAAAAAGCTCTGGACATCCACATGCTTTTACATGGGAACAAGAAATACCAATGCGACAAGTGCGATAAAAGTTTCTTTCAGAAGTGTAACTACCAAAAGCACCATACCAAATTTCACAGTGAAAAAACACCGTACAAATGCTCTCTCTGCTCTCTACAGTTTGCAAACAAGCTCAAATACAACAAGCACATTGAAAGCCACACTAAGCCTGCCCAATTCATGTGTGCAACGTGTCCTAAATCTTTCCATAAGGAATGTCAGTTGAAACGTCACACGCAGACGAGTCATAGCGGGATTGTTTATCGCTGTCCGTATTGCCGAATGGCGTTCAGACACAGACATAGCGTGCGAAGGCACTTCGAACGCCAACATAATGCCTTGAGAGAGGACTGGGATAAGCCGGGATTTCTTAATCAGTTAACAGAAAAAGCTCCTGTTGAATCAATTAATCAGGCACAGATTGAGgataacaaatttttggtaaattaCGAAGATGTGAATAATAAGGATTTTGGGGACACGGACAATGCGCAAGATGGCGCTATGCTGCTGTCTGTCACGGGAATAGACGATACTGCATTTTTACAGACACCTCAAACTGACAGTGTGGTGCAACTTACCACGGAGGATGAAGCCAATTGCAATTCGATAACTGGTCACGAAATTCTTTTGCAAGTGGCAGGCATCGAACAGCCAGGATCTATAACGAATTCAGATTTGTCTCTGACTGAGGTGCCGCAGCTGAGTATTAGCGAGTCGGATGCGCGTCTGGCAGAATCTGTACTTGGCAATGCCTATATATTTGGAGAGGACGGTGGTGATATTATGTTCTACGTACTAGATAACGCCCCAACAATTTCCGAATATTAG
- Protein Sequence
- MNLPAVVRKSKDTEVSLSACSVCGQQHDTTTCPFLLDLHYVKDAPVLSRARQTLPENLEITKMADGLMTVTTRIELPRGTTFGPLYAKRIWTMNPLTHFPIRVFGKSTSETYHLDYSNENSSNWMCFVGPASNAKEQNLICYQVEQDIFYTAMRTIAIGEELRVWYAPYYALRMKMPVFNADFANVSATIPNSEIQQVIKTEKNGEQIGLLKKDVAQELAEKLPAQHLGARDDKATWNCRICSTVICSVVAYAKHLMEHYKPLIGVYCNICNKKCNNVTALERHKSSKHPEESSNDSVVGIPTSESQQQQNAQTIFLNISDSEGQTSEAMKDILEKFKAGKAITESSLLATSTPNDKDSHHSDLPILDTNSINVNDLLQNNGSLIENSSLKSILENQCLNMNLGLNTMTDSMLSVENISASDSVKFNVEELASELLDIVPDVDNINKRIDNLECDICDKKFEKVDYLYRHLRKHTGEFICPACLLVFARKENLLSHTCFSQKLDYHYECPYCQKPFMLKKYLRRHMVKHTAWNNCKWCHSPFSSQSELEAHKCLTPKHECLQCSKRFVHRAHLNRHLKLHENPKPAAKRVRKKPPEKPVICEKCGDVFKTPYSLKQHLSSHGERTYECDICQRRFHRIGVLKEHKAIHQAAQIPCSICGKKLKSKKALDIHMLLHGNKKYQCDKCDKSFFQKCNYQKHHTKFHSEKTPYKCSLCSLQFANKLKYNKHIESHTKPAQFMCATCPKSFHKECQLKRHTQTSHSGIVYRCPYCRMAFRHRHSVRRHFERQHNALREDWDKPGFLNQLTEKAPVESINQAQIEDNKFLVNYEDVNNKDFGDTDNAQDGAMLLSVTGIDDTAFLQTPQTDSVVQLTTEDEANCNSITGHEILLQVAGIEQPGSITNSDLSLTEVPQLSISESDARLAESVLGNAYIFGEDGGDIMFYVLDNAPTISEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200421;
- 90% Identity
- iTF_01048419;
- 80% Identity
- -