Psen011369.1
Basic Information
- Insect
- Phoebis sennae
- Gene Symbol
- -
- Assembly
- GCA_001586405.1
- Location
- LQNK01001070.1:119412-130213[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 3e-05 0.0021 18.5 1.6 1 23 191 213 191 213 0.98 2 30 0.00015 0.011 16.3 0.6 2 20 252 270 251 272 0.94 3 30 0.00011 0.008 16.7 2.3 3 23 300 321 298 321 0.96 4 30 0.5 36 5.2 1.0 2 20 341 359 340 361 0.84 5 30 0.003 0.21 12.2 0.8 1 23 371 393 371 393 0.97 6 30 0.0071 0.5 11.0 0.7 3 23 413 433 412 433 0.96 7 30 4.7e-05 0.0033 17.9 1.5 1 23 472 494 472 494 0.96 8 30 0.00098 0.069 13.7 3.8 2 23 539 561 539 561 0.97 9 30 0.0002 0.014 15.9 1.6 1 23 611 634 611 634 0.97 10 30 0.00025 0.018 15.6 0.3 1 23 687 709 687 709 0.98 11 30 0.016 1.2 9.9 6.0 2 23 721 742 720 742 0.96 12 30 0.0083 0.59 10.8 1.0 2 23 754 775 753 775 0.96 13 30 0.019 1.3 9.7 0.4 1 23 785 807 785 807 0.97 14 30 0.011 0.79 10.4 5.4 1 23 836 858 836 858 0.96 15 30 4.6e-05 0.0033 17.9 1.4 1 23 869 891 869 891 0.98 16 30 0.013 0.88 10.3 3.4 1 23 899 921 899 921 0.97 17 30 0.00051 0.036 14.6 0.2 2 23 941 963 940 963 0.97 18 30 0.68 48 4.8 0.5 1 23 981 1003 981 1003 0.91 19 30 0.095 6.7 7.5 3.7 1 23 1010 1032 1010 1032 0.97 20 30 0.014 1 10.1 2.5 2 23 1043 1065 1042 1065 0.95 21 30 0.0018 0.13 12.9 0.3 2 23 1088 1109 1087 1109 0.95 22 30 6.8 4.8e+02 1.7 4.6 2 23 1152 1174 1151 1174 0.87 23 30 0.0029 0.2 12.2 0.2 2 23 1190 1211 1189 1211 0.95 24 30 0.095 6.7 7.5 5.1 3 23 1219 1239 1217 1239 0.96 25 30 0.0026 0.18 12.4 1.0 2 23 1250 1272 1249 1272 0.95 26 30 0.21 15 6.4 2.8 2 23 1289 1307 1289 1307 0.92 27 30 0.32 23 5.8 2.7 2 21 1311 1330 1311 1331 0.94 28 30 0.44 31 5.4 0.7 2 23 1379 1400 1378 1400 0.93 29 30 0.028 2 9.1 0.3 2 23 1411 1433 1410 1433 0.95 30 30 0.18 13 6.6 1.9 2 20 1471 1489 1471 1491 0.92
Sequence Information
- Coding Sequence
- ATGGCACTCAAGCTTGGAAAATGCAGGCTTTGCCTCAAACTCGGCGATTTCTATTCCATCTTCACGGTGGACAACAGCATGCAACTCGCCGAGATGGTTATGGAATGCGCGCGGGTCAAAATACAAGAAGGGGATGGACTTCCTGATAAGATATGCAGCGAATGTATTCAAAAATTAAGTAGTGCGCATATTTTTAAACAACAATGTGAAAGATCAGATCAAGAACTACGACGTAATTATGTTCCTCCGCCAGGTTTTAGTTCCACACCACCACCGACCGCTCGGCAAAGTAGTGATTCTGCATTTTCCACAGATACATCTAAACCATCTTCTTCTATGGAAAGTAAAGTTACTCCAGCTAGCCGAATGCGCAAAAGAAGCGGAGAAAGCATCGATAATGCATCCAATAGCAGTTCGCATGATTATCAACCAGGAACATCTAAAAGGGTTGAAGAATTGCGAAAATCACAGAAAAGACGAAAAGTTGCTGAGGATAACTCTGACTCAGATTACGATGATAGCCAAGCGTCTTTTTATTCGGCCGGAACAGACTCTGACGAACCGTTAGACTTTAAGTGCGATATATGCGGCAAAAGTTTTAAATCGTACATCAGCATGATATCGCACAAAAAATCTCACAGCAAAAAGAAATATGCACCAATTAAACAGACCGTCGCTCCCCTTCCACCTAAAACTCCGCCTTCTAGCACTCCGACCCCGGGAAATGATGCGCATGACGTTGAAGATGTTTCTAAGTGTGAGAAATGCGGCAAAACCTTCAAGTTGAACATAATGCTCAAGAGACATCAAGACATGTGCGGAAAAATTGAACTCGATAAAGAACTAAAGATTTCATTAGAACCCATTGATGGTCTGACAAGTAGGAACAAAATCGATTGTTCAATGTGTACTACGAAGTTTAAAACTATTGAAAATTTAGAAAAGCACATGAGAATCTGTCATGCAGCAGTCCTTAAGAAAGACAACCCTTCACATATCGTAAATGGTAAAATATGTGTCCCCTGTTTCTATTGCAAGAAAACATTTGAAGATTATTATTCCCACACGGCTCACTTCAAAGTCTGTCCAAACAGAGATGATTCACTCACATTTGTGTGCACAGTATGCAGTAAGCCCTTCATGAAAAAGGCCAGTTACTTCCTACATCTAAAAGCCCATTTTTTTCCCACACTGACTATAAAAAAAGATGAGCCAACAACACCCCAAAGTAATTCTTGTCGCTTTTGTTCTGCAAAGTTCACGAGTCAAGAATCGTTAATCACCCATCTGGCTTCGCACATGGGTAATGTAGAAGATGGAGAGGACGGCGGCGATGAAGAATCTCGAGCCAGTACCTTGGACGACTCCGTGTCTGTTCATTCAGAATACAACACTTCTATAACAAGCGGACCACACAAATGCAGCATATGTGGAAAAGGCTTTAAATATAAAAAGGCACTCGCAACTCATGAGGCGAAACACGGTGAAGATGATAACATAAAAACGGAACCGCCGGATCGAGACAACTCCGATCTATTGAGTCAAACGATGAATGATGATGACCATTTAAATCAGACCGATTCTGAGTCAAGCCAAGGAGAAGAGGAAGATAACACGTGTGATATTTGTGAACGCCAATTTTCGTATAAACGCCTCCTGATACACCATAAGAGAACGAAGCACAACATGAGTTCGGGAACGAAGAGAGCGAAGATCAATCTAAAAGACTGCGCAGTACGTTGTCTCATTTGTGACTTGGAGATGAAAGTGAGCGCGATATACGAGCACAATCAAAAGCACATATCGGCGAATATCAAACCGCGGAACATGTACACCTGCAAGGAATGCGAGCAGCAGTTCAAGAGCTGCAGCGGGCTGGCGAGCCACATCAAGCTGGTGCACAGGTTGAACATGAAGCAGCAAGCGCCGAAGATTACGGTGCCTCAGCCGGACTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAGCCCCTGGATTATGTCCAGAGTCACAGCGACTTTGGAGAGGCTTCCGCCGGAAACGCGACGGGCGTTTTCACGTGTCCCACCTGCAACAAGGTCATGCCGACGCTCATATCGCTCAAGAGGCATATGAACTGGCATACCAACGTCGGCAATAATATTGAGAAGAAACTAGAGTGCTTTGTTTGTAAAGAGACCTTCAGATTTAATTGTCACTACAAATTGCACATGCGGGAACACTACCACGATCCAAATTTGGATCCTGTACATCTCACGTGCCCCATTTGTAATAGAAAGAGTAAACATCTGCGAGCAGCGCAAGCGCACATGAATTATCACAAACAGACACGCTTTCAGAGTAAGGACTACGAGTGTGCAATTTGTAAAAGAGTCTTCCAATTCAGAAAAGTTTATCTCTCCCATATGGCAATTCATTTTAAAAGAGGAGAATCTGCGAACAATACGATAATTGGGTCCGAACTACCGAACACCGCTGACAAAACAGTATTCGACGGGACTCATACTTGCAAAATATGTGGTAAAGTGTGTGACTCTGAGTCCTCTCTAAAATGTCACATGAGCTGGCACAACTCCAAGACGCTACTGTTCGGCGCTCGCCACGAGTGCGAGATATGCGGTCTGCAGTTTACGAACAAGAAACGCCTCGAGCTACACGTGCGCACTCATTACGAGGACGATAATGGACCGTTCAAATGCCACATTTGTGGGAAAGGCTTCATCGCTGAGGACTACCACAAGAGACACGTCAAGAGCCATAACTTTGATCACCAGTCTCACAAGAAACGGATCGAGAAACTCAGAAAGGATAAAGTGAAGTGTCCGATTTGTACGAGATACTATCCGGACTTGGTGAAACTTATCCGTCATTTGCGCAGAACTCACCCAGAAAGCAAAATGATAAAAGAAGACCCGGATGCCCCTCCGCCGATGTACTATCCGTGCAAATTGTGCGCGAAAGTGTTCTTAGATGAAAGAAGGTTGCAACATCACGAAGAAGCACATCTTCGAAAACCAGAGTTCTTCAAGTGCAAATTTTGTGGTAAAAAGACAATATCGCTGAAAAATCATCGGATACACATTAAAGGTCACTTGACGCAGAAGTACCTAGACGAGCCGCTGAAATGTCCACACTGTGATGACAAGTTTACGCGAGGCTATGACTTGCACTATCACTTGAGAGACGTTCACAATATAGACGAGACGTGGATCGCCGATCGAAAGAACCAAGGTCTTGATGGCCCACTTAAAGATCTCCAATGTTCTATATGCTTCAAAATTCTGGCTTCCAAAGGTAATTTCGAAAGGCATATCGATTACCACAACTCGCTTCGGTGTAATTATTGTTTTGACTACTTTAGCACTCTGAGGTTCTTGGAAGGACATTTAGGGTTTAGTTGCGAGAAAAAGAAACTAATCGGTGATACTGAACCCCATCCGAGACGAGTGAAGTGTCATATTTGTTACAAGGCTTTCCATGTGCAGGTTAAGTTAGATTGTCATTTGCGGGCCAAGCACGGCATTAAGTCATTTAAAGAAGCGTCTGAAAGTAGAAAGGAAATCGTGTGTGATTATTGCTTTAGGGTCTTCGAGAATATGGATGCATTAACCACTCACAAGCTTTATCACCGAACCATTGGATACTACGGATGCTTGTACTGCAACAAAAAGTTCAACACCATGACCATGTATAGAAAACACAAGAATCATCATTTTGCTCAGCTCAATGTGGACAATCCTACAAAGTGCGAACATTGTGATGAAACATTTGTGCCGTTCCGGGAATTTATATACCACATGAGAGACGTTCATGGCGACAACAAGGAGTGGATCATATTGCCGAAGGAATCTATCGAAGAAAAGTGCAACATCTGTAATAAAATATTTTACAATCTACACAGGCATCTCGCGTATCACGAAGATAACAGATGCAAGAAATGCGGTGAATATTTCTTTTCGCGTGCCGATTATGATAATCACATTTGTCACATCGATAGCGATGACGAAGTCATGGAAAACTCGGAGAACGATATTCGACCAAAGTATGAAGAATGTGAATTTTGCTTTAAACCCATCACCATCAAAACAAAAAAGAAACACGATCTGCTTCACAGGGGATCGGGTTCGATATCGTGCAGATTTTGTTCTCTCAAATTTAAAACAATCGATGCGTTTAATATTCACGCGTTCTCTCATCGAAGCAGAAAATACAAAAAGCGTCCGATTCGTTGTCGCGTGTGTCGGGAAGCGTTCGTTAAGTATGGGCCATTTATGCGTCACATGAAAAATGTACACAAATGTACCAAAAAGATGCATTATCGCACCACGATCAAACCTGAGAAATGCGTGGTATGCGCGAGAGACTTTCCAAATTTACATAATCATTACCGAGCCCATTTGCAAAACCAATGCCTATCATGTGGAAAGTATTTTACGTCGTCGAAATTGTTTTCGCAGCATGCATGCGACAAAGAAGATAGTGATCCGTCTAAAGTATTCACGTGCGACGCAAATCTCCCCGTTCTTATTAACTCTTACGTGCCAATAGATGAAAAAGATGATGAAAAGTTTTACGGGTACGAGGGCGAAGACGGTGATGATGAAAATGCGGAATTGCCTCAGAACGAAGACAGTCAGAATTCAGCGGATACCGCAGAAAGTACGATACATGAAATGGCCCATGCTCCTATTATATCTGACGTACTATCACTCTATCAGAAAAAAGAGGCAGAAAGCGTCGACAAAGTGGAGATCAAAGATAATAACGTAGTAGAACTAACAGATGATGATTCGGTCGGTTTTGAAGAGAATGTCGTCACAGTCATTACTATCGACGATGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSMQLAEMVMECARVKIQEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSTPPPTARQSSDSAFSTDTSKPSSSMESKVTPASRMRKRSGESIDNASNSSSHDYQPGTSKRVEELRKSQKRRKVAEDNSDSDYDDSQASFYSAGTDSDEPLDFKCDICGKSFKSYISMISHKKSHSKKKYAPIKQTVAPLPPKTPPSSTPTPGNDAHDVEDVSKCEKCGKTFKLNIMLKRHQDMCGKIELDKELKISLEPIDGLTSRNKIDCSMCTTKFKTIENLEKHMRICHAAVLKKDNPSHIVNGKICVPCFYCKKTFEDYYSHTAHFKVCPNRDDSLTFVCTVCSKPFMKKASYFLHLKAHFFPTLTIKKDEPTTPQSNSCRFCSAKFTSQESLITHLASHMGNVEDGEDGGDEESRASTLDDSVSVHSEYNTSITSGPHKCSICGKGFKYKKALATHEAKHGEDDNIKTEPPDRDNSDLLSQTMNDDDHLNQTDSESSQGEEEDNTCDICERQFSYKRLLIHHKRTKHNMSSGTKRAKINLKDCAVRCLICDLEMKVSAIYEHNQKHISANIKPRNMYTCKECEQQFKSCSGLASHIKLVHRLNMKQQAPKITVPQPDLADFCEVVVTKAEPLDYVQSHSDFGEASAGNATGVFTCPTCNKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCKETFRFNCHYKLHMREHYHDPNLDPVHLTCPICNRKSKHLRAAQAHMNYHKQTRFQSKDYECAICKRVFQFRKVYLSHMAIHFKRGESANNTIIGSELPNTADKTVFDGTHTCKICGKVCDSESSLKCHMSWHNSKTLLFGARHECEICGLQFTNKKRLELHVRTHYEDDNGPFKCHICGKGFIAEDYHKRHVKSHNFDHQSHKKRIEKLRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPMYYPCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRIHIKGHLTQKYLDEPLKCPHCDDKFTRGYDLHYHLRDVHNIDETWIADRKNQGLDGPLKDLQCSICFKILASKGNFERHIDYHNSLRCNYCFDYFSTLRFLEGHLGFSCEKKKLIGDTEPHPRRVKCHICYKAFHVQVKLDCHLRAKHGIKSFKEASESRKEIVCDYCFRVFENMDALTTHKLYHRTIGYYGCLYCNKKFNTMTMYRKHKNHHFAQLNVDNPTKCEHCDETFVPFREFIYHMRDVHGDNKEWIILPKESIEEKCNICNKIFYNLHRHLAYHEDNRCKKCGEYFFSRADYDNHICHIDSDDEVMENSENDIRPKYEECEFCFKPITIKTKKKHDLLHRGSGSISCRFCSLKFKTIDAFNIHAFSHRSRKYKKRPIRCRVCREAFVKYGPFMRHMKNVHKCTKKMHYRTTIKPEKCVVCARDFPNLHNHYRAHLQNQCLSCGKYFTSSKLFSQHACDKEDSDPSKVFTCDANLPVLINSYVPIDEKDDEKFYGYEGEDGDDENAELPQNEDSQNSADTAESTIHEMAHAPIISDVLSLYQKKEAESVDKVEIKDNNVVELTDDDSVGFEENVVTVITIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00710403; iTF_00711186; iTF_00358831; iTF_00357857; iTF_01562172; iTF_00115134;
- 90% Identity
- -
- 80% Identity
- -