Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000003.1:2618793-2626888[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.00046 0.044 15.2 2.1 1 23 193 215 193 215 0.98

2 30 0.0004 0.038 15.4 0.3 2 20 255 273 254 275 0.94

3 30 0.00013 0.012 16.9 2.2 3 23 303 324 301 324 0.96

4 30 0.49 47 5.6 0.1 2 21 345 364 344 365 0.93

5 30 0.00096 0.093 14.2 0.3 1 23 375 397 375 397 0.97

6 30 0.0038 0.36 12.3 0.2 1 23 415 437 415 437 0.98

7 30 5.9e-05 0.0057 18.0 1.2 1 23 476 498 476 498 0.97

8 30 0.00048 0.046 15.1 1.9 2 23 541 563 541 563 0.97

9 30 0.0013 0.12 13.8 1.1 1 23 613 636 613 636 0.97

10 30 0.00054 0.052 15.0 0.2 1 23 689 711 689 711 0.98

11 30 0.022 2.1 9.9 6.0 2 23 723 744 722 744 0.96

12 30 0.011 1.1 10.8 1.0 2 23 756 777 755 777 0.96

13 30 0.014 1.3 10.5 0.4 1 23 787 809 787 809 0.98

14 30 0.29 28 6.3 4.6 1 23 838 860 838 860 0.96

15 30 0.00029 0.028 15.8 2.0 1 23 871 893 871 893 0.99

16 30 0.0002 0.019 16.3 1.1 1 23 901 923 901 923 0.97

17 30 0.00069 0.067 14.6 0.2 2 23 943 965 942 965 0.97

18 30 0.48 46 5.7 0.4 1 23 983 1005 983 1005 0.92

19 30 0.35 34 6.1 3.6 1 23 1012 1034 1012 1034 0.96

20 30 0.0069 0.67 11.5 2.1 2 23 1045 1067 1044 1067 0.95

21 30 0.0024 0.23 12.9 0.3 2 23 1090 1111 1089 1111 0.95

22 30 1.2 1.1e+02 4.5 5.9 2 23 1154 1176 1153 1176 0.97

23 30 0.0017 0.16 13.4 0.3 2 23 1192 1213 1191 1213 0.95

24 30 5 4.8e+02 2.5 4.6 5 23 1223 1241 1220 1241 0.94

25 30 0.00064 0.062 14.7 1.6 2 23 1252 1274 1251 1274 0.95

26 30 0.28 27 6.4 2.8 2 23 1291 1309 1291 1309 0.92

27 30 0.74 71 5.1 2.8 2 21 1313 1332 1313 1333 0.93

28 30 0.24 23 6.6 0.4 2 23 1381 1402 1380 1402 0.93

29 30 0.021 2.1 9.9 0.2 2 23 1413 1435 1412 1435 0.96

30 30 0.45 43 5.8 3.1 2 20 1473 1491 1472 1493 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.00046	0.044	15.2	2.1	1	23	193	215	193	215	0.98
2	30	0.0004	0.038	15.4	0.3	2	20	255	273	254	275	0.94
3	30	0.00013	0.012	16.9	2.2	3	23	303	324	301	324	0.96
4	30	0.49	47	5.6	0.1	2	21	345	364	344	365	0.93
5	30	0.00096	0.093	14.2	0.3	1	23	375	397	375	397	0.97
6	30	0.0038	0.36	12.3	0.2	1	23	415	437	415	437	0.98
7	30	5.9e-05	0.0057	18.0	1.2	1	23	476	498	476	498	0.97
8	30	0.00048	0.046	15.1	1.9	2	23	541	563	541	563	0.97
9	30	0.0013	0.12	13.8	1.1	1	23	613	636	613	636	0.97
10	30	0.00054	0.052	15.0	0.2	1	23	689	711	689	711	0.98
11	30	0.022	2.1	9.9	6.0	2	23	723	744	722	744	0.96
12	30	0.011	1.1	10.8	1.0	2	23	756	777	755	777	0.96
13	30	0.014	1.3	10.5	0.4	1	23	787	809	787	809	0.98
14	30	0.29	28	6.3	4.6	1	23	838	860	838	860	0.96
15	30	0.00029	0.028	15.8	2.0	1	23	871	893	871	893	0.99
16	30	0.0002	0.019	16.3	1.1	1	23	901	923	901	923	0.97
17	30	0.00069	0.067	14.6	0.2	2	23	943	965	942	965	0.97
18	30	0.48	46	5.7	0.4	1	23	983	1005	983	1005	0.92
19	30	0.35	34	6.1	3.6	1	23	1012	1034	1012	1034	0.96
20	30	0.0069	0.67	11.5	2.1	2	23	1045	1067	1044	1067	0.95
21	30	0.0024	0.23	12.9	0.3	2	23	1090	1111	1089	1111	0.95
22	30	1.2	1.1e+02	4.5	5.9	2	23	1154	1176	1153	1176	0.97
23	30	0.0017	0.16	13.4	0.3	2	23	1192	1213	1191	1213	0.95
24	30	5	4.8e+02	2.5	4.6	5	23	1223	1241	1220	1241	0.94
25	30	0.00064	0.062	14.7	1.6	2	23	1252	1274	1251	1274	0.95
26	30	0.28	27	6.4	2.8	2	23	1291	1309	1291	1309	0.92
27	30	0.74	71	5.1	2.8	2	21	1313	1332	1313	1333	0.93
28	30	0.24	23	6.6	0.4	2	23	1381	1402	1380	1402	0.93
29	30	0.021	2.1	9.9	0.2	2	23	1413	1435	1412	1435	0.96
30	30	0.45	43	5.8	3.1	2	20	1473	1491	1472	1493	0.93

Sequence Information

Coding Sequence: ATGGCACTCAAGCTTGGAAAATGCAGGCTTTGCCTCAAGCTTGGCGATTTCTATTCCATCTTCACGGTGGACAACAATTTGCAACTCGCCGAGATGGTTATGGAATGTGCGCGGGTTAAAATACAAGAAGGCGACGGTCTCCCCGATAAAATATGCAGCGAATGTATTCAAAAGTTAAGCAGTGCGCATATTTTTAAACAACAATGTGAAAGGTCAGATCAAGAGTTGCGACGTAATTATGTTCCACCACCAGGTTTTAGTTCAACTCCACCACCTATTGCTCGCCAAAGCAGTGATTCCGCCTTCTCAACGGACGCTTCTAAACCCTCTTCGTCCTTAGAAAGTAAAGTAACACCCGCTAGTAGAGTGCGCAAGAGAAGCGGAGAGAGCATCGGTAATACATCTAACAGTAGCTTTTCCCACGATTATCAACCTGGCACTTCCAAACGAGTTGAAGAACTGCGAAAGTCTCAGAAAAGACGAAAAGTTCGTGATGACGTCAGAGATGACTCAGATTTTGAAGATAACAGCGCATCATTCTATTCTGCTGGGACGGACTCTGATGAACCGCTAGATTTCAAATGCGATATCTGTTCGAAATCCTTTAAAAGTTACATTAGCATGTCTGCACACAAAAAAAGCCATAGCAAAAGAAAGACTGTGGTACCTAAGCAGCCTGTAGCTCCGCCTCCACTCAGCACTCCACCTTTACACAGCACTCCGCCCCCGCAAAACGACGATCACGATGTCGAAGATGTTTCTAAATGTGAGAAATGTGGCAAGACatttaaattgaatataatGCTTAAGAGACATGTGGACGTGTGCGGAAAAATTGAACTCGATAAAGAGCTTATGATTTCATTAGAACCTATTGATGCTGTGccgataaaaaacaaaatagatTGTACAATGTGTTCGACGAAGTTTAAAAATATCGAGAATTTAGAAAAACATATGAGAGTTTGTCACGCTGCAGTTCTTAAAAAAGAAACACCTGCAACGCAAATCGAAAATGGGAAAATTTCTGTTCCTTGTTTTTATTGTCGCAAACCATTGAACGATTATTATTCCTACACAGCACACTTTCGTGTGTGTCCTAAAAGAGACGATTCGCTTACATTTGTGTGCCCAATTTGTAATAAATCGTTGGTGAAAAAAGCTAGTTATTTCTTGCATTTAAAAGCACATTTCTTTCCTGTAACTACTGTAAAAAAGAATGAACCCACTTCACCCAATAATTTTTCATGTCGCTTTTGTTCCACAAAGTACCCTAGCCAAGAAGCTCTTATCGCGCACTTAGCTACACACATGAGCAATACAGAAGTTGTTGAAGATGTAGGCGATGAAGAATCACGGGCTAGTACTTTGGATGATTCAGCTTCTGCACATTCGGAATACAACTCGTCAATAACGAGCGGACCATACAAATGTGAAATATGTGGAAAagaatttaaatacaaaaaagccTTCTCTACTCATGCGGCTAAACATGCTGAAGATGTCAATGTAAAAACTGAACCACCAGACAGAGACACTTCTGAGTTATTGAGCCAGTCGATGAATTATGATCAATTAAACCAGTCCGATTCCGAATCGAGCCACGGAGAAGAAGACAACACGTGTGATATTTGCGAACGTCAATTTTCTTATAAACGTCTACTCATCCAACACAAGAGAACCAAACACAACATGACCTCTGGAACGAAGAGAGCGAAGATAAATCTCAAAGACTGCGCCGTTCGCTGTCTCATTTGTGACTTGGAAATGAAAGTGAGCGCGATATATGAGCACAATCAGAAACACATATCGGCGAATATAAAGCCGAGAAATATGTACACTTGTATGGAATGCGAGCAACAGTTCAAGAGTTGTAGCGGACTCGCGAGTCATATTAAACTGGTGCACAGATTGCATATGAAGCAGCGAGCGCCGAAGATCACGGCGCCAACGCCGGACTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAGCCCTTGGATTATGTCCAGAGTCACAGCGACTTTGGGGAGGCTTCCGCCGGGACTGCGCCGGGCGTGTTCTCATGTCCCACGTGCAATAAAGTGATGCCCACGCTCATTTCACTGAAGCGGCACATGAATTGGCACACTAATGTCGGCAACAATATCGAGAAGAAACTCGAATGTTTCGTTTGCAAAGAGACCTTCAGATTCAATTGTCACTACAAACTACACATGCGAGAACACTACCATGACACTAACTTAGATCCCATACATCTGACTTGCCCGATTTGCAACAGAAAGAGCAAACACTTGCGCGCTGCACAAGCGCATATGAACTATCACAAACAAACCCGCTTCCAGAATAAAGATTATGAGTGCGCTATTTGTAAAAGAGTTTTCCAATACAGAAAAGTTTATCTCTCGCATATGGCCATACATTTTAAGCGCGGGGAATCTGCAAATAACACGATAATAGGTTCTGAACTACCAAACACGGCCGACAAAACAGTTTTTGATGGCTCTCATACGTGTGCAATGTGCGGTAAAGTGTGTGATTCGGAAACATCGCTCAAATGTCACATGAGTTGGCACAAATCGAAGACGTTACTATTCGGTGCGCGGTATGAGTGTGAAATTTGCACTTTGCGGTTTACCAACAAGAAACGCCTCGAACTTCATTTTCGAACCCATTTCGAAGATGATAACGGTCCGTTTAAGTGTCATATTTGCGGTAAAGGCTTTATCGCAGAAGAATACTACCGGAGACACGTCAAAGGTCATAACTTTGACCATCAGTCTCATAAGAAGAGGATTGAGAAACTCAGAAAGGACAAAGTAAAGTGTCCAATTTGTACAAGATACTACCCAGACTTGGTGAAGCTTATTCGTCATCTAAGAAGAACTCACCCCGAAAGTAAAATGATTAAAGACGACCCGGATGCTCCCCCGCCTATGTACTATCCGTGCAAATTGTGTGCTAAGGTCTTCTTAGATGCGCGACGTCTGCAACACCACGAAGAGGCTCATCTTCGGAAACCAGAGTTCTTCAAGTGCAAGTTTTGTGGGAAGAAAACAATTTCGCTGAAAAGTCATCGCATTCACATCAAAGGGCATTTGACGCAGAAATACATTGACGAACCACTGAAATGCCCTCACTGCGATGACACATTCACAAGAGGCTATGACTTGCATTATCACTTGAGAGACGCACACGATATAGACGAGACATGGATTGCCGATCGAAAGAATGCAGGCCTCGATGGACCTCTGAAAGACCTGCAATGTTCTATATGTTTCAAAATACTCGCATCCAAAGGTAATTTCGAACGGCACATTGACTACCATAATTCGCTACGGTGCAATTATTGTTTCGATTACTTCAGTACGCTGAGATTCTTGGAAGGCCATCTTGCGTTCAGCTGTGAGAAAAAGAAATTGATTGGTGATACTGAAATATATCCTAGAAAAGTGAAATGCCATATATGTTACAAGGCATTCCATGTTCAAGTGAAGTTAGACTGCCACATGCGAACTCAGCACGGCATTAAGTCGTTCAAAGAAGCTTCAGAGAGCAAAAAGGAAATTGTATGTGATTATTGTTTTAGAGTATTTGAAAATTCGGATGCCCTCAGTACTCACAAGCTTTATCATAGGACTATAGGGTACTATGGATGTATTTACTGCAGCAGAAAGTTCAACACCATGACAACATATAGAAAGCATAAGAATCATCACTTTTCCCAACATAATGTGGAGAATCCGACAAAGTGTGAACATTGTGATGAAACATTTGTGCAGTTCCGCGAATTTATTTATCACATGCGAGATGTTCACGGCGACAATAAAGAGTGGGTCGTGCTACCGAAAGATTCTATTGAAGAGAAATGTAATATTTGCAACAAAATCTTTTACAATCTACACAGACATCTCGCATATCACGAGGAGAATAGGTGCAAGAAGTGTGGTGAATACTTCTTTTCGCGGGTCGACTATGACAACCACATTTGTCACATCGATAGTGACGATGAAGTTTTGGAGAACGCGGAGAACGATATTCGGCCGAAGTATGAAGAGTGTCAGTTTTGCTTCAAACCTCTCACGCTCAAAACTAAAAAGGTACACGATATACTACACAAAGGATCCGGTTCTATATCGTGCAGATTTTGTCctctcaaatttaaaacaattgaCGCGTTCAATATACACGCGTTTTCTCACCGAagtagaaaatataaaaaacatcCGATTCGTTGTCGCATTTGTCGAGAGGCGTTCGTTAAATATGGGCCTTTCATCCGTCACATGAAGAACGTGCACAAGTCGACCAAAAAGATGCATTACCGGACCACGATCAAACCGGAAAAATGCGTGGTGTGCTCGGGGTTGTTCCCGAATTTGCACAATCATTATCGGGCACATTTGCAAAATCAATGCCAACAATGCCGGAAGTATTTTACATCATCGAAACTGTTTTCGCAACACGCGTGCGACAAAGAAGACAGTGATCCATCGAAAGTGTTCACGAGTGACGCGAACCTGCCACAGCTGATCAACTCTTATGTGCCCGTAGATGAGAAAGACGACGAAAAGTTTTACGGTTATGAAAGCGAAAATGCTGAGGAGGAAAACGGGGAATTGCCTCAGAATAACGTCAATAGTCATATTGAAGATCCTCAGAATGAAGATAGTCAGAATTCCGCGGATACAGCCGAGAGCACGATACATGAGATGGCTCACGCGCCAATAATATCTGACGTGCTGTCTCTGTACCAAAAGAAAGAAGCAGACAGCAATGAGAACAAAGATGTAGTTGAACTCACCGATGATGATTCGGTGggttttgaaaataatatacttacggTAATTACTATTGACGACGATTAG
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIQEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSTPPPIARQSSDSAFSTDASKPSSSLESKVTPASRVRKRSGESIGNTSNSSFSHDYQPGTSKRVEELRKSQKRRKVRDDVRDDSDFEDNSASFYSAGTDSDEPLDFKCDICSKSFKSYISMSAHKKSHSKRKTVVPKQPVAPPPLSTPPLHSTPPPQNDDHDVEDVSKCEKCGKTFKLNIMLKRHVDVCGKIELDKELMISLEPIDAVPIKNKIDCTMCSTKFKNIENLEKHMRVCHAAVLKKETPATQIENGKISVPCFYCRKPLNDYYSYTAHFRVCPKRDDSLTFVCPICNKSLVKKASYFLHLKAHFFPVTTVKKNEPTSPNNFSCRFCSTKYPSQEALIAHLATHMSNTEVVEDVGDEESRASTLDDSASAHSEYNSSITSGPYKCEICGKEFKYKKAFSTHAAKHAEDVNVKTEPPDRDTSELLSQSMNYDQLNQSDSESSHGEEDNTCDICERQFSYKRLLIQHKRTKHNMTSGTKRAKINLKDCAVRCLICDLEMKVSAIYEHNQKHISANIKPRNMYTCMECEQQFKSCSGLASHIKLVHRLHMKQRAPKITAPTPDLADFCEVVVTKAEPLDYVQSHSDFGEASAGTAPGVFSCPTCNKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCKETFRFNCHYKLHMREHYHDTNLDPIHLTCPICNRKSKHLRAAQAHMNYHKQTRFQNKDYECAICKRVFQYRKVYLSHMAIHFKRGESANNTIIGSELPNTADKTVFDGSHTCAMCGKVCDSETSLKCHMSWHKSKTLLFGARYECEICTLRFTNKKRLELHFRTHFEDDNGPFKCHICGKGFIAEEYYRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKDDPDAPPPMYYPCKLCAKVFLDARRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYIDEPLKCPHCDDTFTRGYDLHYHLRDAHDIDETWIADRKNAGLDGPLKDLQCSICFKILASKGNFERHIDYHNSLRCNYCFDYFSTLRFLEGHLAFSCEKKKLIGDTEIYPRKVKCHICYKAFHVQVKLDCHMRTQHGIKSFKEASESKKEIVCDYCFRVFENSDALSTHKLYHRTIGYYGCIYCSRKFNTMTTYRKHKNHHFSQHNVENPTKCEHCDETFVQFREFIYHMRDVHGDNKEWVVLPKDSIEEKCNICNKIFYNLHRHLAYHEENRCKKCGEYFFSRVDYDNHICHIDSDDEVLENAENDIRPKYEECQFCFKPLTLKTKKVHDILHKGSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYKKHPIRCRICREAFVKYGPFIRHMKNVHKSTKKMHYRTTIKPEKCVVCSGLFPNLHNHYRAHLQNQCQQCRKYFTSSKLFSQHACDKEDSDPSKVFTSDANLPQLINSYVPVDEKDDEKFYGYESENAEEENGELPQNNVNSHIEDPQNEDSQNSADTAESTIHEMAHAPIISDVLSLYQKKEADSNENKDVVELTDDDSVGFENNILTVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01193761;
90% Identity: iTF_00358831; iTF_01562172;
80% Identity: -