Acar016331.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anthocharis cardamines
Gene Symbol
-
Assembly
GCA_905404175.1
Location
FR989953.1:2253492-2262688[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00065 0.063 14.1 1.7 1 23 193 215 193 215 0.98
2 30 0.00031 0.03 15.1 0.5 2 20 251 269 250 271 0.94
3 30 1.2e-05 0.0012 19.5 0.9 3 23 298 319 296 319 0.96
4 30 5.1 5e+02 1.8 0.6 2 19 340 357 339 360 0.78
5 30 0.0088 0.86 10.5 0.4 1 23 370 392 370 392 0.97
6 30 0.00017 0.017 15.9 1.4 1 23 410 432 410 432 0.98
7 30 3.2e-05 0.0031 18.2 1.1 1 23 470 493 470 493 0.97
8 30 0.00019 0.018 15.8 1.9 2 23 537 559 537 559 0.97
9 30 0.072 7 7.7 0.9 1 23 609 633 609 633 0.95
10 30 0.0011 0.1 13.4 0.3 1 23 687 709 687 709 0.98
11 30 0.0058 0.57 11.1 4.6 2 23 721 742 720 742 0.96
12 30 0.0073 0.71 10.8 1.0 2 23 754 775 753 775 0.96
13 30 0.0023 0.23 12.4 0.6 1 23 785 807 785 807 0.98
14 30 0.054 5.3 8.1 6.4 1 23 836 858 836 858 0.96
15 30 0.0011 0.11 13.4 4.3 1 23 869 891 869 891 0.98
16 30 1.3e-05 0.0013 19.4 1.2 1 23 899 921 899 921 0.98
17 30 0.00045 0.044 14.6 0.2 2 23 941 963 940 963 0.97
18 30 0.6 58 4.8 0.5 1 23 981 1003 981 1003 0.91
19 30 2.8 2.8e+02 2.7 3.4 1 23 1010 1032 1010 1032 0.88
20 30 0.00067 0.066 14.1 3.0 2 23 1043 1065 1042 1065 0.95
21 30 0.00052 0.05 14.4 0.2 2 23 1088 1109 1087 1109 0.95
22 30 8.8 8.6e+02 1.1 0.3 2 20 1113 1131 1112 1132 0.80
23 30 7.6 7.4e+02 1.3 5.5 2 23 1152 1174 1151 1174 0.93
24 30 0.0025 0.24 12.3 0.3 2 23 1190 1211 1189 1211 0.95
25 30 0.45 43 5.2 4.7 3 23 1219 1239 1217 1239 0.96
26 30 0.0052 0.51 11.3 1.0 2 23 1250 1272 1249 1272 0.95
27 30 0.085 8.2 7.5 3.5 2 23 1289 1307 1289 1307 0.94
28 30 0.84 82 4.3 2.8 2 21 1311 1330 1311 1331 0.93
29 30 0.23 23 6.1 1.6 2 23 1411 1433 1410 1443 0.96
30 30 0.86 84 4.3 2.3 2 20 1471 1489 1470 1491 0.93

Sequence Information

Coding Sequence
ATGGCACTCAAGCTTGGAAAATGCAGGCTTTGCCTCAAGCTTGGCGATTTCTATTCCATCTTTACAGAGGACAACAATCTACAACTCGCCGAGATGGTTATGGAATGCGCGCGGGTTAAAATACAAGAAGGCGATGGACTCCCGGACAAAATATGCAGCGAATGTGTGCAGAAATTGAGTAGTGCGCATATTTTTAAACAGCAATGCGAAAGGTCAGATCAAGAACTACGCCGTAACTATATCCCACCACCAGGTTTTACCTCTGCAACACCACCACCAATAAATAGACAGAGCAGTGACTCTGCTTTCTCTACAGATACATCGAAACCATCTTCCTCCAGTGAAAGCAAAGTTACCCCCATAAGCCGATTGGGCAAAAGAAGTAGACAGAGCATTGACAATGCTTCCAGTAGCAGCGTTTCTCATGAGTACCAACCTGTCAGTGCCAAACGCGTTGAAGAACTACGAAAGTCCCAGAAGCGGCTAAAGACTCAGGATGACATTTCTGATTCTGATTTTGAAGACAACAATGTCTCAGTCTATTCAGGTGGTACTGATTCTGATGAACCTCTCGAGTTCAAATGTGACATCTGTTCAAAAGCTTTTAAAACCTACATAAGTATGATTTCTCATAAAAAAAATCACAGCCGCAAGTATAAACAACAGCAGGCTTCTCTCGCTAGCTCCCAAACCACGCCGCCGAAACCCGACGTGCAGCTCAATATTACCAACGAAGATGAGGACAAGTCTAAATGTGAGACATGTGGAAAAACATTCAAATTAAAGATAATGTTGAAGCGACACTATGAATTATGTGGCAAACTCTTAGACAAGGAACTTAAAATATCATTAGAACCGATTGACGCTGTGCCTGGCGAAATAAAAATTGACTGTCAAATGTGCACAGCTAAGTTTAAAACTAGAGACAATTTAAAAAAACACATGAAAGTTGTACATGCGGCTGTCCTAAAAACAGACGAACCTTCAGCACAGATGGAGAATGGTAAAATATGTGTTCCTTGTTTCTACTGTCGAAAACCATTCGACGACTTTTATTCTCACTCAGCACATTTCAGAGTCTGTCCGAATAGAGATGATTCCCTTTCTTTTGTCTGTACAGTGTGCGATAAAGTTTTGATGAAAAAAGCTAGTTACTTTTTACATTTAAAAGCTCATTTTTTTCCCGTAACTAACATAAAGACAGATTCTTCTCCGCCTCCGCAAACTTATACTTGCCGCTTCTGCAAAAAGAATTTATCTAACCAAGAGTCATTGATAAGGCATTTAGCGACTCACATGTCCAACGTAGAAGGAACAGACGATGGCGGCGACGAAGAGTCTTGGAGTACTTTAAACGACTCTGCATCTGTTCATTCAGAGTATAGTTCTTCGATAACAACTGGACCGTACAAATGCCAAATATGCGAAAAAGGATTCAAATATAAGAAGGCCTTAGTGACCCACCAGTTGGTAAAACATCCAAATGTGGACATCAAATCGGAACCGCCTGATAAAGACACCTCTTTAGATCTGTTGAGTGAAACAATGAATAATGACAGTGTTAATCAATCTGAATCTGAATCTAGTCATGGGGAGGAGGACGACAATACCTGTGATATTTGCGAAAAACAATTCTCATACAGACGGCTGCTGATCAATCACAAAAGAACTAAACATAATATGAGCTCAGGAACGAAAAGAGCCAAGATCAGTCTGAAGGAGTGCTTGGTGCGTTGTTTGATCTGCGATTTAGAGATGAAAGTGAGCGCAATCAACGAGCACAACATGAAACACATATCGGCGAACATGAAGCCGCGAAACCTGTACACCTGCGTCGAATGCACGGAGCAGCAGTTCAAAAGCTGCAGCGCGCTAGCCAACCACATCAAGCTCGTGCACCGGCTGAACCAGCCGGCGGCCAAGCAACCGAAGATCACAGTGCCCACGCCAGATCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGATAATGTCCAGAGTCACAACGACATTGGGGACGATTCCGCCTACGCGACTGTGAACGGGTTCACGTGCCCGACTTGCAACAAGGATATGCCGACTCTTATATCTCTTAAGCGGCACATGAACTGGCACACCAATGTCGGTAACAATATCGAGAAGAAGCTAGAGTGTTTTGTTTGCAAAGAGGCATTCAGATTCCAGTGCCACTACAAAATACACATGCGTGAACATTATAGTGACACGAATCTTGATCCCAAACACCTGACTTGTCCAATCTGCAATAGGAAGAGCAAGCACCTACGTGCCGCTCAGGCCCACATGAACTACCACAAACAAACTCGCTTCAAGACTAAAGACTACCAGTGTGCCATCTGCAAGAAAGTCTTTCAGTACAGGAAGGTCTACCTCTCTCACATGGCGATCCACTTTAAGCGAGGCGAATCTGCGAACAATACAGTCATTGGATCAGTCTTACCTACCACTGCTGACAAAAACGCTTTCGATGGCACCCATACTTGCAAAATCTGCAACAAAGTGTGCGACTCTGAATCATCTCTTAAATGTCACATGAGCTGGCACAACTCTAAGACGCTGCTCTATGGAGCGCGACATGAGTGCGACATCTGCCATTTACAATTCACCAACAAAGTTCGCCTAAAAGTCCACACGCGCTCGCATTTCGAAGACGAGAATGGTCCATATAAATGCCACATCTGTGGGAAAGGTTTCATCGCGGAAGATTACTTCCGGAGACATATCAAAGGACACAATTTCGATCACCAGTCTCACAAGAAGCGAATTGAGAAACTAAGAAAGGATAAAGTTAAATGTCCTATTTGTACGAGGTATTATCCAGATTTGGTGAAGCTTATCCGTCACTTACGCCGAACCCATCCAGAGAGCAAAATGATTAAAGAAGATCCGGACGCGCCGCCACAGATGTACTACCCGTGCAAGCTGTGCGCCAAGGTTTTCCTCGATGAGCGCAGACTACAGCATCATGAGGAAGCTCACCTCCGCAAGCCCGAATTTTTCAAGTGTAAATTCTGCGGCAAGAAAAATATCTCGTTGAAAAATCATCGAGTCCATATCAAAGGACACTTGACTCAGAAGTATATAGATGAGCCTCTCAAGTGCCAGCATTGTGACGAAACCTTTTCACGAGGCTACGACCTACACTACCACTTACGGGACGTCCATAACATCGAAGAAACCTGGATCGCTGACAGAAACAATCAAGGCCTTAATGGTCCCCTGAAAGAGCTTCAGTGTTCAATTTGTTATAAAGTTCTTGCTAGCAAAGGAAATTTCGAGAGACACATCGATTATCATAACTCACTTCGCTGTAATTACTGCTTCGATTACTTCAGCACTCTGCGATTTTTAGAAGGTCACTTGGGATTCAGTTGCGAAAAGAAAAAACTGATCGGCGATACGGAAATTTATCCTAGAAAAGTCAAGTGCCATATTTGTTATAAGGCATTCCATATCCAAGTTAAGTTAGATTGCCATTTGCGAACTCAGCACGGAATTAAATCCTTCAGAGAAGCTACGGAAAGTAAAAAAGAACTCGTTTGTGATTACTGCTTTAGAGTGTTTGAAAATGAGTATGCATTGAGCAATCACAAGCTTTACCACAGGTCGGTCGGATTCTATGGGTGTATGTATTGTAATAAGAAATTCAACACTATGACGGTGTACAGAAAACATAAAAACCATCACTTCGCCCAATTGAATGTAGATAATCCTACGAAATGTGAACATTGCGATGAAACTTTTGTGGCGTTCCGAGAGTTTATATATCACATGCGAGACGTTCACGACGACGACAAGGAGTGGATCGTGTACCCGAAAGAATCCATCGAGGAAAAGTGCAACATTTGCAATAAAGTGTTTTACAACCTCCACAGGCATCTCTCGTATCACGAAGATAATAGGTGCAAGAAATGTGGAGAGTACTTCTTCTCACGAATAGATTATGATAATCACATTTGTCACATCGACAGCGAAGACGAGGTTGACGATAACGCTGAAAACGACATTCGGCCAAAATACGAAGAATGTAGATTTTGTTTCAAACCTATCACATATAAAACTAAAAAGAAACACGATATAATTCACAAAGGATCTGGTTCTATATCTTGCCGGTTTTGTATTCTTAAATTTAAAACTATCGATGCATTCAATATTCATGCGTTTTCTCATCGAAGCCGGAAGTATAAGAAGCATCCGATTCGATGTCGCATCTGTCGCGAACAATTCGTCAAGTACGGTCCGTTCGTGCGCCACATGAAGTTTGTGCATAAATCAGACAAAAAGATGCACTACCGAACAACTATAAAGCCAGAGAAATGTGTAGTATGTGGCGATGAATTTCCAAATCTCCACAACCACTACCGGGCGCATTTACAGAATCAGTGTTTACAATGTCGCAAATATTTCACCTCCGCGAAGTTGTTTTCGCAACATGAATGTGATAAAGAAGATAGCGATCCGTCGAAAGTGTTCACGAGTGATGCCAACCTTCCCCTGATGATCGATACTTATGTTCCTTTAGATGAAAAAGATGATGAAAAGTTATACGGCTACGAAGGTGAAGGAGACGATGATGGTGATGGAAACGAGGAATTACCTCAAAATGAAGACAGTCAGAATTCAGCGGATGCGGCCGAGAGCTCTCTTCACGCGATGGTGCATGCGCCTATCATATCTGACGTTTTATCGCTATATCAGAAGAGAGAGATAGTGAATGTAGAGGAAACTGTACAAAAGAAAGATAATAACGTTGTTGAACTAACTGATGACGATTCGGTTGGATTTGAAGACAATAATATCGTTACGGTTATTACCATTGATGATGATGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTEDNNLQLAEMVMECARVKIQEGDGLPDKICSECVQKLSSAHIFKQQCERSDQELRRNYIPPPGFTSATPPPINRQSSDSAFSTDTSKPSSSSESKVTPISRLGKRSRQSIDNASSSSVSHEYQPVSAKRVEELRKSQKRLKTQDDISDSDFEDNNVSVYSGGTDSDEPLEFKCDICSKAFKTYISMISHKKNHSRKYKQQQASLASSQTTPPKPDVQLNITNEDEDKSKCETCGKTFKLKIMLKRHYELCGKLLDKELKISLEPIDAVPGEIKIDCQMCTAKFKTRDNLKKHMKVVHAAVLKTDEPSAQMENGKICVPCFYCRKPFDDFYSHSAHFRVCPNRDDSLSFVCTVCDKVLMKKASYFLHLKAHFFPVTNIKTDSSPPPQTYTCRFCKKNLSNQESLIRHLATHMSNVEGTDDGGDEESWSTLNDSASVHSEYSSSITTGPYKCQICEKGFKYKKALVTHQLVKHPNVDIKSEPPDKDTSLDLLSETMNNDSVNQSESESSHGEEDDNTCDICEKQFSYRRLLINHKRTKHNMSSGTKRAKISLKECLVRCLICDLEMKVSAINEHNMKHISANMKPRNLYTCVECTEQQFKSCSALANHIKLVHRLNQPAAKQPKITVPTPDLADFCEVVVTKAEPLDNVQSHNDIGDDSAYATVNGFTCPTCNKDMPTLISLKRHMNWHTNVGNNIEKKLECFVCKEAFRFQCHYKIHMREHYSDTNLDPKHLTCPICNRKSKHLRAAQAHMNYHKQTRFKTKDYQCAICKKVFQYRKVYLSHMAIHFKRGESANNTVIGSVLPTTADKNAFDGTHTCKICNKVCDSESSLKCHMSWHNSKTLLYGARHECDICHLQFTNKVRLKVHTRSHFEDENGPYKCHICGKGFIAEDYFRRHIKGHNFDHQSHKKRIEKLRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPQMYYPCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKNISLKNHRVHIKGHLTQKYIDEPLKCQHCDETFSRGYDLHYHLRDVHNIEETWIADRNNQGLNGPLKELQCSICYKVLASKGNFERHIDYHNSLRCNYCFDYFSTLRFLEGHLGFSCEKKKLIGDTEIYPRKVKCHICYKAFHIQVKLDCHLRTQHGIKSFREATESKKELVCDYCFRVFENEYALSNHKLYHRSVGFYGCMYCNKKFNTMTVYRKHKNHHFAQLNVDNPTKCEHCDETFVAFREFIYHMRDVHDDDKEWIVYPKESIEEKCNICNKVFYNLHRHLSYHEDNRCKKCGEYFFSRIDYDNHICHIDSEDEVDDNAENDIRPKYEECRFCFKPITYKTKKKHDIIHKGSGSISCRFCILKFKTIDAFNIHAFSHRSRKYKKHPIRCRICREQFVKYGPFVRHMKFVHKSDKKMHYRTTIKPEKCVVCGDEFPNLHNHYRAHLQNQCLQCRKYFTSAKLFSQHECDKEDSDPSKVFTSDANLPLMIDTYVPLDEKDDEKLYGYEGEGDDDGDGNEELPQNEDSQNSADAAESSLHAMVHAPIISDVLSLYQKREIVNVEETVQKKDNNVVELTDDDSVGFEDNNIVTVITIDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01193761;
90% Identity
-
80% Identity
-