Ccro008846.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
-
Assembly
GCA_905220415.1
Location
HG991960.1:10964770-10974700[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00068 0.053 14.4 2.1 1 23 193 215 193 215 0.98
2 30 0.00033 0.026 15.4 0.3 2 20 255 273 254 275 0.94
3 30 0.00011 0.0084 16.9 2.2 3 23 303 324 301 324 0.96
4 30 0.0008 0.063 14.2 0.3 1 23 375 397 375 397 0.97
5 30 0.0031 0.25 12.3 0.2 1 23 415 437 415 437 0.98
6 30 1.1e-05 0.00089 20.0 0.7 1 23 476 498 476 498 0.97
7 30 0.0004 0.031 15.1 1.9 2 23 541 563 541 563 0.97
8 30 0.001 0.083 13.8 1.1 1 23 613 636 613 636 0.97
9 30 0.00028 0.022 15.6 0.3 1 23 689 711 689 711 0.98
10 30 0.018 1.4 9.9 6.0 2 23 723 744 722 744 0.96
11 30 0.0093 0.73 10.8 1.0 2 23 756 777 755 777 0.96
12 30 0.011 0.89 10.5 0.4 1 23 787 809 787 809 0.98
13 30 0.072 5.7 8.0 4.5 1 23 838 860 838 860 0.96
14 30 0.002 0.16 12.9 3.5 1 23 871 893 871 893 0.98
15 30 0.00011 0.0085 16.9 1.1 1 23 901 923 901 923 0.97
16 30 0.00057 0.045 14.6 0.2 2 23 943 965 942 965 0.97
17 30 0.4 31 5.7 0.4 1 23 983 1005 983 1005 0.92
18 30 0.29 23 6.1 3.6 1 23 1012 1034 1012 1034 0.96
19 30 0.0058 0.45 11.5 2.1 2 23 1045 1067 1044 1067 0.95
20 30 0.002 0.16 12.9 0.3 2 23 1090 1111 1089 1111 0.95
21 30 9.6 7.6e+02 1.3 0.3 2 20 1115 1133 1114 1134 0.82
22 30 5.9 4.7e+02 2.0 5.8 2 23 1154 1176 1153 1176 0.96
23 30 0.0013 0.1 13.5 0.1 2 23 1192 1213 1191 1213 0.95
24 30 0.55 44 5.2 5.2 3 23 1221 1241 1219 1241 0.96
25 30 0.00053 0.042 14.7 1.6 2 23 1252 1274 1251 1274 0.95
26 30 0.23 18 6.4 2.8 2 23 1291 1309 1291 1309 0.92
27 30 0.61 48 5.1 2.8 2 21 1313 1332 1313 1333 0.93
28 30 0.2 16 6.6 0.4 2 23 1381 1402 1380 1402 0.93
29 30 0.018 1.4 9.9 0.2 2 23 1413 1435 1412 1435 0.96
30 30 0.37 29 5.8 3.1 2 20 1473 1491 1472 1493 0.93

Sequence Information

Coding Sequence
ATGGCACTCAAGCTTGGAAAATGCAGGCTTTGCCTCAAGCTTGGCGATTTCTATTCCATCTTCACGGTGGACAACAATTTGCAACTCGCCGAGATGGTTATGGAATGTGCGCGGGTTAAAATACAAGAAGGCGACGGTCTCCCCGATAAAATATGCAGCGAATGTATTCAAAAGTTGAGCAGTGCGCATATTTTTAAACAACAATGTGAAAGGTCGGATCAAGAGTTGCGACGTAATTATGTTCCACCACCAGGTTTTAGTTCAACTCCACCACCTATTGCTCGTCAGAGCAGTGATTCCGCCTTCTCAACGGACGCTTCTAAACCCTCTTCGTCCTTAGAAAGTAAAGTAACACCCGCTAGTAGAGTGCGCAAGAGAAGCGGAGAGAGCATCGGTAATACATCTAACAGTAGCTTTTCCCACGATTATCAACCTGGCACTTCCAAACGAGTGGAAGAACTGCGAAAGTCTCAGAAAAGACGAAAAGTTCGTGATGACGTCAGAGACGACTCAGATTTTGAAGATAATAGCGCATCATTCTATTCTGCCGGGACAGACTCTGATGAACCGCTAGATTTCAAATGCGATGTCTGTTCGAAATCCTTTAAAAGTTACATTAGCATGTCTGCACACAAAAAAAGCCATAGCAAAAGAAAGACTGTGGTACCTAAGCAGCCTGTAGCTCCGCCTCTACTCAGCACTCCACCTTTACACAGCACTCCGCCTCCGCAAAACGACGCTCACGATGTCGAAGATGTTTCTAAATGTGAGAAGTGTGGCAAGACATTTAAATTGAATATAATGCTTAAGAGGCATGTGGACGTGTGCGGAAAAATTGAACTCGATAAGGAGCTTATGATTTCCTTAGAACCTATTGATGCTGTGCCGATAAAAAACAAAATAGACTGTACAATGTGTTCGACAAAGTTTAAAAATATCGAGAATTTAGAAAAACATATGAGAGTCTGTCACGCTGCAGTTCTTAAAAAAGAAACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATTATTATTCCTACACAGCACACTTTCGTGTGTGTCCTAAAAGAGACGATTCGCTTACATTTGTGTGCCCAATTTGTAATAAATCGTTGGTGAAAAAAGCTAGTTATTTCTTGCATTTAAAAGCACATTTCTTTCCCGTAGCTACTGTAAAAAAGAATGAACCCACTTCACCCAATAATTTTTCATGTCGCTTTTGTTCCACAAAGTACCCTAGCCAAGAAGCTCTTATTGCGCACTTAGCTACACACATGAGCAATACAGAAGCTGTTGAAGATGTCGGCGATGAAGAATCACGGGCTAGTACTTTGGATGATTCAGCTTCTGCACATTCGGAATACAACTCATCAATAAGGAGCGGACCATACAAATGTGAAATATGTGGAAAAGAATTTAAATACAAAAAAGCCCTATCTACTCATGCGGCTAGACATGCTGAAGATGTTAATGTAAAAACTGAACCACCGGACAGAGACACTTCTGAGTTATTGAGCCAGTCGATGAATTATGATCAATCAAACCAGTCCGATTCCGAATCGAGCCACGGAGAAGAAGACAACACGTGTGATATTTGCGAACGTCAATTTTCTTATAAACGTCTACTCATCCAACACAAGAGAACCAAACACAACATGACCTCTGGAACGAAGAGAGCGAAGATAAATCTCAAAGACTGCGCCGTTCGCTGTCTCATTTGTGACTTGGAAATGAAAGTGAGCGCGATATATGAGCACAATCAGAAACACATATCGGCGAATATAAAGCCGAGAAATATGTACACTTGTATGGAATGCGAGCAACAGTTCAAGAGTTGTAGCGGACTCGCGAGTCATATTAAACTGGTGCACAGATTGCATATGAAGCAGCAAGCGCCGAAGATCACGGCGCCAACGCCGGACTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAGCCCCTGGATTATGTCCAGAGTCACAGCGACTTTGGGGAGGCTTCCGCCGGGACTGCGCCGGGCGTGTTCACATGTCCCACATGCAATAAAGTGATGCCCACGCTCATTTCACTGAAGCGGCACATGAATTGGCACACTAATGTCGGCAACAATATTGAGAAGAAACTCGAATGTTTCGTTTGCAAAGAGACCTTCAGATTCAATTGTCACTACAAACTACACATGCGAGAACACTACCATGACACTAATTTAGATCCCATACATCTGACTTGTCCGATTTGCAACAGAAAGAGCAAACACTTGCGCGCTGCGCAAGCGCATATGAACTATCACAAACAAACCCGCTTCCAGAATAAAGATTATGAGTGCGCTATTTGTAAAAGAGTTTTCCAATACAGAAAAGTTTATCTCTCACATATGGCCATACATTTTAAGCGCGGGGAATCTGCAAATAACACGATAATAGGTTCTGAACTACCAAACACGGCCGACAAAACAGTTTTTGATGGCTCTCATACGTGTTCAATGTGCGGTAAAGTGTGTGATTCGGAAGCATCGCTCAAATGTCACATGAGTTGGCACAAATCGAAGACGTTACTATTCGGTGCGCGGCATGAGTGTGAAATTTGCACTTTGCGGTTTACCAACAAGAGACGCCTCGAACTTCATTTTCGAACCCATTTCGAAGATGATAACGGTCCGTTTAAGTGTCATATTTGCGGTAAAGGCTTTATCGCAGAAGATTACTACCGGAGACACGTCAAAGGTCATAACTTTGACCATCAGTCTCATAAGAAGAGGATTGAGAAACTCAGAAAGGACAAAGTAAAGTGTCCAATTTGTACAAGATACTACCCAGACTTGGTGAAGCTTATTCGTCATCTAAGAAGAACTCACCCCGAAAGTAAAATGATTAAAGACGACCCGGATGCTCCCCCGCCTATGTACTATCCGTGCAAATTGTGTGCTAAGGTCTTCTTAGATGCGCGACGTCTGCAACACCACGAAGAGGCTCATCTTCGGAAACCAGAGTTCTTCAAGTGCAAGTTTTGTGGGAAGAAAACAATTTCGCTGAAAAGTCATCGCATTCACATCAAAGGACATTTGACGCAGAAATACATTGACGAACCTCTGAAGTGCCCTCACTGCGATGATACATTCACAAGAGGCTATGACTTGCATTATCACTTGAGAGACGCACACGATATAGATGAGACATGGATTGCCGATCGAAAAAATGCAGGCCTCGATGGACCTCTGAAAGACCTGCAATGTTCTATATGTTTCAAAATACTCGCATCTAAAGGTAATTTCGAACGGCACATTGACTACCATAATTCGCTACGGTGCAATTATTGTTTCGATTACTTCAGTACGCTGAGATTCTTGGAAGGCCATCTTGCGTTCAGCTGCGAGAAAAAGAAATTGATTGGTGATACTGAAATATATCCTAGAAAAGTGAAATGCCATGTATGTTACAAGGCATTCCACATTCAAGTGAAGTTAGACTGCCACATGCGAACTCAGCACGGCATTAAGTCGTTCAAAGAAGCTTCAGAGAGCAAAAAGGAAATTGTATGTGATTATTGTTTTAGAGTATTTGAAAATCCGGATGCCCTCAGTACACACAAGCTTTATCATAGGACTATAGGGTACTACGGATGTCTTTACTGCAGCAGAAAGTTCAACACCATGACAACATATAGAAAGCATAAGAATCATCACTTATCCCAACATAATGTGGAGAATCCGACAAAGTGTGAACATTGTGATGAAACATTTGTGCAGTTCCGCGAATTTATTTATCACATGCGAGATGTTCACGGCGACAATAAAGAGTGGGTCGTGCTACCGAAAGATTCTATTGAAGAGAAATGTAATATTTGCAACAAAATTTTTTACAATCTACACAGACACCTCGCATATCACGAGGAGAATAGGTGCAAGAAGTGCGGTGAATACTTCTTTTCGCGGGTCGACTATGACAACCACATTTGTCACATCGATAGTGACGATGAAGTTTTGGAGAACGCGGAGAACGATATTCGGCCGAAGTATGAAGAGTGTCAGTTTTGCTTCAAACCTCTCACGCTCAAAACTAAAAAGGTACACGATATACTACACAAAGGATCCGGTTCTATATCGTGCAGATTTTGTCCTCTCAAATTTAAAACAATTGACGCGTTCAATATACACGCGTTTTCTCACCGAAGTAGAAAATATAAAAAACACCCGATTCGTTGTCGCATTTGTCGAGAGGCGTTCGTTAAATATGGGCCTTTCATCCGTCATATGAAGAACGTGCACAAGTCGACCAAAAAGATGCATTACCGGACCACGATCAAACCGGAAAAATGCGTGGTGTGCTCGGGGTTGTTCCCGAATTTGCACAATCATTATCGGGCGCATTTGCAAAATCAATGCCAACAATGCCGGAAGTATTTTACATCATCGAAACTGTTTTCGCAACACGCGTGCGACAAAGAAGACAGTGATCCATCGAAAGTGTTCACGAGTGACGCGAACCTGCCACAGCTGATCAACTCTTATGTGCCCGTAGATGAGAAAGACGACGAAAAGTTTTACGGTTATGAAAGCGAAAATGCTGAGGAGGAAAACGGGGAATTGCCTCAGAATAACGTCAATAGTCATATTGAAGATCCTCAGAATGAAGATAGTCAGAATTCCGCGGATACAGCCGAGAGCACGATACATGAGATGGCTCACGCGCCAATAATATCTGACGTGCTCTCTCTGTACCAAAAGAAAGAAGCAGACAGCAATGAGAACAAAGATATAGTTGAACTCACCGATGATGATTCGGTGGGTTTTGAAAGTAATATACTTACGGTAATTACTATTGACGACGATTAG
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIQEGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSSTPPPIARQSSDSAFSTDASKPSSSLESKVTPASRVRKRSGESIGNTSNSSFSHDYQPGTSKRVEELRKSQKRRKVRDDVRDDSDFEDNSASFYSAGTDSDEPLDFKCDVCSKSFKSYISMSAHKKSHSKRKTVVPKQPVAPPLLSTPPLHSTPPPQNDAHDVEDVSKCEKCGKTFKLNIMLKRHVDVCGKIELDKELMISLEPIDAVPIKNKIDCTMCSTKFKNIENLEKHMRVCHAAVLKKETPXXXXXXXXXXXXXXXXXXXXXDYYSYTAHFRVCPKRDDSLTFVCPICNKSLVKKASYFLHLKAHFFPVATVKKNEPTSPNNFSCRFCSTKYPSQEALIAHLATHMSNTEAVEDVGDEESRASTLDDSASAHSEYNSSIRSGPYKCEICGKEFKYKKALSTHAARHAEDVNVKTEPPDRDTSELLSQSMNYDQSNQSDSESSHGEEDNTCDICERQFSYKRLLIQHKRTKHNMTSGTKRAKINLKDCAVRCLICDLEMKVSAIYEHNQKHISANIKPRNMYTCMECEQQFKSCSGLASHIKLVHRLHMKQQAPKITAPTPDLADFCEVVVTKAEPLDYVQSHSDFGEASAGTAPGVFTCPTCNKVMPTLISLKRHMNWHTNVGNNIEKKLECFVCKETFRFNCHYKLHMREHYHDTNLDPIHLTCPICNRKSKHLRAAQAHMNYHKQTRFQNKDYECAICKRVFQYRKVYLSHMAIHFKRGESANNTIIGSELPNTADKTVFDGSHTCSMCGKVCDSEASLKCHMSWHKSKTLLFGARHECEICTLRFTNKRRLELHFRTHFEDDNGPFKCHICGKGFIAEDYYRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICTRYYPDLVKLIRHLRRTHPESKMIKDDPDAPPPMYYPCKLCAKVFLDARRLQHHEEAHLRKPEFFKCKFCGKKTISLKSHRIHIKGHLTQKYIDEPLKCPHCDDTFTRGYDLHYHLRDAHDIDETWIADRKNAGLDGPLKDLQCSICFKILASKGNFERHIDYHNSLRCNYCFDYFSTLRFLEGHLAFSCEKKKLIGDTEIYPRKVKCHVCYKAFHIQVKLDCHMRTQHGIKSFKEASESKKEIVCDYCFRVFENPDALSTHKLYHRTIGYYGCLYCSRKFNTMTTYRKHKNHHLSQHNVENPTKCEHCDETFVQFREFIYHMRDVHGDNKEWVVLPKDSIEEKCNICNKIFYNLHRHLAYHEENRCKKCGEYFFSRVDYDNHICHIDSDDEVLENAENDIRPKYEECQFCFKPLTLKTKKVHDILHKGSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYKKHPIRCRICREAFVKYGPFIRHMKNVHKSTKKMHYRTTIKPEKCVVCSGLFPNLHNHYRAHLQNQCQQCRKYFTSSKLFSQHACDKEDSDPSKVFTSDANLPQLINSYVPVDEKDDEKFYGYESENAEEENGELPQNNVNSHIEDPQNEDSQNSADTAESTIHEMAHAPIISDVLSLYQKKEADSNENKDIVELTDDDSVGFESNILTVITIDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01193761;
90% Identity
iTF_00357857;
80% Identity
-