Ptri023688.1
Basic Information
- Insect
- Philotrypesis tridentata
- Gene Symbol
- -
- Assembly
- GCA_018906965.1
- Location
- JACCIB010000001.1:20463771-20465232[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-12 8.5e-09 36.0 0.0 1 35 39 74 39 81 0.92
Sequence Information
- Coding Sequence
- ATGTATACACCGGAGGCCAAGCTGTTGGAGTCATCCCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCAGCTGACTACTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACGCGGCAAGAGCTGCAGGAGGCCATCGAGGCCGTGGTGACGCAGAAGATGCGGTTCACCCAGGCCTCGAGCAAGTACGGGATACCCAAGGGCACGCTCTACGACAACATCCTCGGCAAGTCCAAGCGGATGATGGTCCTCGAGGAGGCCGGCCTCGAGCTCGCCGAGGAGCAGGCCGTCCTCGAGTTCTGCTGCGACATCAGCCTCAGTCCCTACAATCGCCGGACGAAAAAGTCCCTCCAGGCCATCCTCGGCTTCGTCGAGAGGCTGAGGCGGCGCCGCGAGCCCGGCTTCGGCTTCGCCGGCCTCGCCGGATTCCGCTGGTGGTGGGCCTTCTGCAAGAAGCACGGCATCGTCTCGCTCTACTTCAACGACGAGAACGACAACGGCAGCGATCACTCGGCCGCCTCCAACTGA
- Protein Sequence
- MYTPEAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAGLELAEEQAVLEFCCDISLSPYNRRTKKSLQAILGFVERLRRRREPGFGFAGLAGFRWWWAFCKKHGIVSLYFNDENDNGSDHSAASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00969493;
- 90% Identity
- iTF_00286247; iTF_01036121; iTF_00287114; iTF_00143798; iTF_00368047; iTF_00073641; iTF_00845206; iTF_00738993; iTF_00079769; iTF_00304989; iTF_00326298; iTF_00969493; iTF_00969494; iTF_00734490; iTF_01381243; iTF_01380524; iTF_00691007; iTF_00691847; iTF_00690088; iTF_01110857; iTF_00708468; iTF_01112500; iTF_01111678;
- 80% Identity
- -