Msti013729.1
Basic Information
- Insect
- Megastigmus stigmatizans
- Gene Symbol
- -
- Assembly
- GCA_900490015.1
- Location
- UELV01038853.1:1-752[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-11 5.4e-09 36.5 0.0 1 35 14 49 14 56 0.92
Sequence Information
- Coding Sequence
- GACTACTCGAGCCTACTGAAGCTGAAGGCGCCCACGTGGACGCGGCAAGAGCTGCAAGAGGCGATAGAGGCCGTGGTCACCCAGAAGATGCGCTTCACCCAGGCCTCGAGCAAGTACGGCATACCCAAGGGAACCCTATACGACAACATACTCGGCAAGTCCAAGAGAATGATGGTACTCGAGGAGGCGGGTCTAGATCAAGCCGAGGAGAACGCCGTGCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCCTACAATCGGAGGACGAAAAAGTCCCTCAACCAGATACTCAGCTACGTTGAGAAGCTGAGACGTCAGAGAGAGCCCGGATTCACCTTCACGGGCTTAGCCGGCTTTCGCTGGTGGTGGGCCTTCTGCAAGAAACACGGCATCGTGTCCCTCTACTTCAACGACGAGAACGACAACgagtga
- Protein Sequence
- DYSSLLKLKAPTWTRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAGLDQAEENAVLEFCCDISVSPYNRRTKKSLNQILSYVEKLRRQREPGFTFTGLAGFRWWWAFCKKHGIVSLYFNDENDNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01467873; iTF_01200066; iTF_00287114; iTF_01190244; iTF_00378668; iTF_00652610; iTF_00377924; iTF_00263365; iTF_00050729; iTF_01508784; iTF_00379540; iTF_00840982; iTF_01537819; iTF_00343100; iTF_00905342; iTF_01468748; iTF_01467011; iTF_01469579; iTF_01213244;
- 90% Identity
- iTF_01190244;
- 80% Identity
- iTF_00969494;